XLOC_004551 (slc4a1b)


Basic Information

Item Value
gene id XLOC_004551
gene name slc4a1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10053852 ~ 10100504 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009051
GGACAGACAATATTGCTTTAGTAGTAGGACAAGATATACAGTATTTAAGgtcCTCTGAATGTAAACATTACCTAACAAAAAAGCAGATTTTCAGGCTTACATGGAGATGAATGAGTCTGCGAAGAGCCCGAACCAGCAGAGCTACTGGCAGGAGATGGGCAGATGGGCAGGTTATGAAGAGACATATGATGTGGAGGCGGGTCGATGGAGCCCTTCTCACATCTCCTACCTCACCTTTAAGAGCCTTGTGCAGATACGCAGGACAATGAACACCGGTGTGATGATGCTGGACAGAGAGGAGAAGACGCTCTCCAGTATTATTGAGAAGATTGTGGATACCCTGGTTAGCAAAAAGGAGATTCAGCCAGGGGACAGGGATAAAGTTCTTCAAGCATTAATGCACAAACAGAGCCAATCAGTGGAGACCCAGCCTCTGACCTCAAATGTGGAAATGGAGAAATTCTCTGTCACAGAGAAAAGGGAGACAGCGGATAAAACAGAGGCCTCGATGGTGCTCGTAGgTGCTCTGGAGTTCCTGGAGAGGCCTACAGTAGTATTTGTGCGTCTTCGGGATGCTGTGGTGCTGGAGTCGGCTCTGGAGGCTCCTGTTCCTGTgcgtttcatcttcatcctcatcgGCCCGACCATAGATGGCATGAACTACCACGAGTGTGGTCGAGCGATGGCAGCTCTACTCGCTGACAAAGTATTTAACCAAGCAGCTTTCCAGGCTCAGAGTGACCGAGAGCTCACAGATGCAGTGGGAGACTTTATGGACTGCTGCATCGTGATTCCACCCACTGAGATTCAGAATGAGTCTTTGCTAACATCACTCATCCCCTTCCAGAAGAAACTGCTGCAAGAGAGACTCCGGCCCTCCAATCCTAAACTTCGCCTGGATGTCAAACCTCGCAAGCCTTCAAAATCTTCAGGACCTCCTCCGGAAGACCCACTAACACGTACTGGTGTCCCGTTCGGTGGGATGATCAGAGACATGAAAAGACGATACAAACACTACATCAGCGACCTCACTGATGCTCTGAACGCTCAGGTTCTTGCTGCCATCATCTTCATTTACTTTGCTGCACTCTCACCTGCCATCACCTTCGGAGGTCTGCTCGCTCTTACTTTTCTCATAGCTGATAAGGTGGATAACATGATGGGAGTGTCGGAGCTGATGATCTCCACTTCACTTCTGGGCATTATCTTCTGTCTGATCGCTGCTCAACCTGTACTAGTTATCGGCTTTTCTGGGCCACTGCTGGTGTTTGAAGAGGCCTTTTTTAATTTCTGTAAGTCTCAGGGCATTGAGTACATCGTAGGCCGAGTGTGGGTGGGCATTTGGCTGGTGGTCATCGTGGTGGGGATTGTTGCATTAGAAGGAAGCTTCCTGGTTCGCTTCATCTCCCGCTTCACTCAAGAGATCTTCTCCATCCTCATCTCCCTCATCTTCATCTATGAGACATTTGCCAAACTTTTAAAGATTTTCAGAGAACATCCACTTACCCTGAATTATGAGCATTTAAACACTAGTGTTGAGGACCCCTGGCACTCTATTGTCAGCTATCAGAAAATCTTCGATAATGCTACAGGCAATGTGTCTGTCGTGAGGACTGTTGAACATCAAGCATATCCCAACACTGCCCTTCTGTCTATGTGTCTCATGTTCGGCTGTTTCTCCATTGCATACTACCTACGCATGTTCAAGAATGGAAAATTCCTGCCAGGAAAGATTCGACGTTTGCTTGGTGACTTTGGAGTTCCCATTGCAATTTTCCTCATGGCTGCCATTGATATCAACATTGAGGATACATACACTCAGAAACTGGTGGTGCCTAAAGGTCTTCAGGTGTCCAACCCTAGCATGCGGGGCTGGTTAATCAACCCATTTGGTGAGCATAAGAGTTTCCCCGTGTGGATGATGTTCGCCTCTATTGTCCCAGCTATCTTGGTCTTCATCCTCATTTTCCTTGAGTCTCAGATCACCACGCTAATTGTAAGTAAACCAGAGAGAAAAATGGTCAAGGGTTCTGGCTTCCACATGGATCTTCTCATCCTGGTGAGCATGGGGGGTCTGAGTGCCTTTTTTGGCATTCCTTGGTTGAGTGCCGCCACTGTACGATCTGTATCTCATGCCAACGCTCTGACGGTCATGAGTAAGGGCCCAAAACCTGAGATCGAGAAAGTTCTGGAACAGAGAGTCAGTGGTGTAGTGGTGGCTTTGCTTGTTGGTCTTTCTATTCTCATggagcccattttgaaaatgattccCATTACAGCTCTGTTTGGAATCTTCCTCTACATGGGAATCACATCACTGAGTGGTATTCAGCTTTGGGATCGAATGCTGCTTCTTCTTATTCCCAAAAAGTATCACCCTAATGAACCCTATGCTACAAGAGTCAGCACCAGTAAGATGCACGTGTTCACTGCCATTCAAATGGTGTGTTTGGCAGTCCTCTGGATAGTGAAATCAAGCCCAGCGTCTCTGGCTCTACCATTCGTCCTCATACTCACCATCCCTCTGCGCATGTTCATGACCGGACGACTTTTCACAGAGCAAGATATGAAGTTTCTTGACGGTGATGATTCCAAGGCAACATTTGAAGAGGAGCCAGGAGTGGATGTGTATTCTGAAACTCAGATGCCACTGTAATCAACTTGTCTACAACCAAACCCATTGTTGGCAATCAACAGAATTCGAGAACAGGCAACATATGAAGGAtttgacaatatatcatcaccttggaattataaggttctatctgcgttctgaatgatattcagatattgagctttaaagtttttgcattccatatagcaaacaatatgtgtgtaacagttctctttcatacattaacatgacagagaccctaaatttACTCTacatgtaaattatcaaagttctcttacatttgcaaattggagtaaaaaaaaa
>TCONS_00009052
CTGCTGTTTATGTTTACTATAGTAAAGCTCAGCTTCGGTTAAACCCCTCGTCCTCTCCTTTGTCTTCCTCTCTCCTTTGCATTCActtcctttttttcatttttgtcttgGATAAGGTGTGATGATGCTGGACAGAGAGGAGAAGACGCTCTCCAGTATTATTGAGAAGATTGTGGATACCCTGGTTAGCAAAAAGGAGATTCAGCCAGGGGACAGGGATAAAGTTCTTCAAGCATTAATGCACAAACAGAGCCAATCAGTGGAGACCCAGCCTCTGACCTCAAATGTGGAAATGGAGAAATTCTCTGTCACAGAGAAAAGGGAGACAGCGGATAAAACAGAGGCCTCGATGGTGCTCGTAGgTGCTCTGGAGTTCCTGGAGAGGCCTACAGTAGTATTTGTGCGTCTTCGGGATGCTGTGGTGCTGGAGTCGGCTCTGGAGGCTCCTGTTCCTGTgcgtttcatcttcatcctcatcgGCCCGACCATAGATGGCATGAACTACCACGAGTGTGGTCGAGCGATGGCAGCTCTACTCGCTGACAAAGTATTTAACCAAGCAGCTTTCCAGGCTCAGAGTGACCGAGAGCTCACAGATGCAGTGGGAGACTTTATGGACTGCTGCATCGTGATTCCACCCACTGAGATTCAGAATGAGTCTTTGCTAACATCACTCATCCCCTTCCAGAAGAAACTGCTGCAAGAGAGACTCCGGCCCTCCAATCCTAAACTTCGCCTGGATGTCAAACCTCGCAAGC

Function

symbol description
slc4a1b Enables anion:anion antiporter activity and bicarbonate transmembrane transporter activity. Acts upstream of or within calcium ion import. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Is expressed in ball; gill; ionocyte; and sensory system. Human ortholog(s) of this gene implicated in congenital hemolytic anemia; hereditary spherocytosis; hereditary spherocytosis type 4; malaria; and renal tubular acidosis. Orthologous to human SLC4A1 (solute carrier family 4 member 1 (Diego blood group)).

GO:

id name namespace
GO:0070509 calcium ion import biological_process
GO:0051453 regulation of intracellular pH biological_process
GO:0055085 transmembrane transport biological_process
GO:0015701 bicarbonate transport biological_process
GO:0006811 ion transport biological_process
GO:0050801 ion homeostasis biological_process
GO:0006820 anion transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0008509 anion transmembrane transporter activity molecular_function
GO:0015301 anion molecular_function
GO:0015106 bicarbonate transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110215-2 Enables anion:anion antiporter activity and bicarbonate transmembrane transporter activity. Acts upstream of or within calcium ion import. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Is expressed in ball; gill; ionocyte; and sensory system. Human ortholog(s) of this gene implicated in congenital hemolytic anemia; hereditary spherocytosis; hereditary spherocytosis type 4; malaria; and renal tubular acidosis. Orthologous to human SLC4A1 (solute carrier family 4 member 1 (Diego blood group)).

Ensembl:

ensembl_id ENSDARG00000024560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009051 False 2938 mRNA 0.46 18 10053852 10100504
TCONS_00009052 True 758 mRNA 0.49 5 10062953 10069164

Neighbor

gene id symbol gene type direction distance location
XLOC_004550 NA coding upstream 103363 9941133 ~ 9950489 (+)
XLOC_004549 ndufa4 coding upstream 169526 9880493 ~ 9884326 (+)
XLOC_004548 fam117ab coding upstream 177776 9849476 ~ 9876076 (+)
XLOC_004547 rundc3ab coding upstream 213033 9817440 ~ 9840819 (+)
XLOC_004546 NA coding upstream 241366 9797037 ~ 9812486 (+)
XLOC_004552 si:dkeyp-118b1.2 coding downstream 15460 10115964 ~ 10125777 (+)
XLOC_004553 smarcd2 coding downstream 33862 10134366 ~ 10160941 (+)
XLOC_004554 psmc5 coding downstream 63081 10163585 ~ 10175487 (+)
XLOC_004555 si:ch73-103l1.2 coding downstream 78948 10179452 ~ 10193551 (+)
XLOC_004556 CU459020.1 coding downstream 110428 10210932 ~ 10211048 (+)
XLOC_004542 NA non-coding upstream 604121 9443721 ~ 9449731 (+)
XLOC_004536 NA non-coding upstream 1082820 8968317 ~ 8971032 (+)
XLOC_004533 NA non-coding upstream 1496693 8556636 ~ 8557159 (+)
XLOC_004565 CR450852.1 non-coding downstream 1543047 11643551 ~ 11643671 (+)
XLOC_004568 NA non-coding downstream 2314752 12415256 ~ 12415835 (+)
XLOC_004569 BX548041.1 non-coding downstream 2512831 12613335 ~ 12613451 (+)
XLOC_004579 BX649204.1 non-coding downstream 3356733 13457237 ~ 13457356 (+)

Expression


Co-expression Network