XLOC_004552 (si:dkeyp-118b1.2)


Basic Information

Item Value
gene id XLOC_004552
gene name si:dkeyp-118b1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10115964 ~ 10125777 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009053
GTTTTGTCTATGAGGAAATACTTAGTGGGAAATGTCTCTTTggaacttttttgtttgttaccTTTCATGCGCAAACCGTTAATGGGACAAAGAACTTGTAAGTTAGATCCCTATCAGATTTCAGTATTGATTTGATCAGATGAGCAACCTCAGTCAGTGCAGTGAACAGATCGACAACAGCCTCCATTCCCGAGCTGCCTCTCCTCAGCCCATGACTGCTGCACTACAGCATGTAGACAGCAGTTCTTTCTCCTGGAGCTTTTGCAAATGAAAATGGAGGACGTGTCTCTGTCCAGTATGGACAACAGTAAGATGGAGGGCTTTGCTCAAGAGATCCTGTCTGACCTGGTGGAGGACGCCTGTTTGGGTCTTTGTTTTGAAGTTCACAGGGCTGTCAAACAGGGATACTTTTTCCTGGACGATACAGACCAAGAGAGTATGAAAGACTTTGAAATTGTGGACCAGCCTGGAGTAGACATTTTTGGGCAAGTGTACAACCAGTGGAAAAACAAAGAGTGCGTTTGTCCCAACTGCAGCCGCAGCATCGCTGCCTCACGATTTGCTCCTCATCTGGAGAAATGCCTTGGCATGGGCCGCAACAGCAGTCGTATTGCCAACCGCAGAATTGCGAGTGGCAACAACACGAACAAATCGGAGAGCGATCAGGAGGACAATGATGATGTCAACGACAATGACTGGTCTTATGGGGCAGAAAAGAAAGCCAAGAAGAGAAAGTCAGATAAGAATCCAAATTCACCAAGAAGATCCAAATCCATGAAACATAAAAATGACTGAACCGAAGAGATGAACCGGAGAAGATTTCCACGTCAAAGAAAGCAGAGTCTCAGAACACACCTCTAATCACCACGGGTCAGTGGTAGTTCGAAGGTGTTAACCAGCGGGAACAAACTTTTCTGGAAAGTGTTCTTTGCCATTAATTTTGGCCTGATTTTCTTTGAGATTACATAATACCTCTTCGTTATTGGATATTTGCTTGAAGTTTATCGGGGCTTTCAGGGGCCATTCACAATAGAACGTGTTTGTGAGTTGAAAAGCAGGTGGTGTAAgggtgaaaaaaaagttttttgagtAAGCACTTTACCTTGAGCATCACAGATTTAAAATGCTATGTCAAGCATGTGACAATGCAAACGGCGCAACGCTCAAACACATCCACCTAGTGCATGTTTACTTAAACTAGCAATGTAATTGCAGTGTGTACTGTGTGAACGGCCCCCTTTTGGTGCATTTCAGATGTTCAAGGTCAATTTTGAAGCTTTACGTGTTGGTATAAACATGTTGTAagctagggctgcacagtatattgAAATGAGATCAAAATAGCCATGTGGCTTAGTGCAGTTCTCAACTGTGCATGCTACACtgtaaaggaacactccactttattTGGAAATAGCCTTACTTTACTTAGTTTAACTCCTCTGGAATTATTGCTAGtcccttctgtagttacattgtgtactaagactgacagaaaatgaaatgCTCTTTTCTAGCTTGATATGACTAGGAACTATAGTCTTATTTTTAGCGTAATAATGGGAACTATTTTCAACCAATGCATTGTACTATTACACCAGCTGCTGCTAAAATTAgtcagcaaagttccttgatcatTACCCtggagtatagttcctagccatattgacCTAGAACTAGCaactttcattttccttcaatcttggtacacaatgtaactacagagaagtcaagctttaaatagggaaTTTAGTTATAAGGTAATTtgagcaaaatgctaatggtctaatccgatttaatgacctatgctaagctaagctaaaagtgctcagaCACATCTGGAGATcggctaaatggattcaaaaatagtaaaacaacTGTTTAACACTTGGTGAattgtaaaa
>TCONS_00009054
ATGAAAATGGAGGACGTGTCTCTGTCCAGTATGGACAACAGTAAGATGGAGGGCTTTGCTCAAGAGATCCTGTCTGACCTGGTGGAGGACGCCTGTTTGGGTCTTTGTTTTGAAGTTCACAGGGCTGTCAAACAGGGATACTTTTTCCTGGACGATACAGACCAAGAGAGTATGAAAGACTTTGAAATTGTGGACCAGCCTGGAGTAGACATTTTTGGGCAAGTGTACAACCAGTGGAAAAACAAAGAGTGCGTTTGTCCCAACTGCAGCCGCAGCATCGCTGCCTCACGATTTGCTCCTCATCTGGAGAAATGCCTTGGCATGGGCCGCAACAGCAGTCGTATTGCCAACCGCAGAATTGCGAGTGGCAACAACACGAACAAATCGGAGAGCGATCAGGAGGACAATGATGATGTCAACGACAATGACTGGTCTTATGGGGCAGAAAAGAAAGCCAAGAAGAGAAAGTCAGATAAGAATCCAAATTCACCAAGAAGATCCAAATCCATGAAACATAAAAATGGT

Function

GO:

id name namespace
GO:0006325 chromatin organization biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016578 histone deubiquitination biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0071819 DUBm complex cellular_component
GO:0000124 SAGA complex cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7685 Predicted to enable transcription coactivator activity. Predicted to be involved in histone deubiquitination; positive regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Predicted to be part of DUBm complex and SAGA complex. Orthologous to human ATXN7L3 (ataxin 7 like 3).

Ensembl:

ensembl_id ENSDARG00000079131

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009053 False 1904 mRNA 0.41 8 10115964 10125777
TCONS_00009054 True 525 mRNA 0.47 6 10116912 10122638

Neighbor

gene id symbol gene type direction distance location
XLOC_004551 slc4a1b coding upstream 15460 10053852 ~ 10100504 (+)
XLOC_004550 NA coding upstream 165475 9941133 ~ 9950489 (+)
XLOC_004549 ndufa4 coding upstream 231638 9880493 ~ 9884326 (+)
XLOC_004548 fam117ab coding upstream 239888 9849476 ~ 9876076 (+)
XLOC_004547 rundc3ab coding upstream 275145 9817440 ~ 9840819 (+)
XLOC_004553 smarcd2 coding downstream 8589 10134366 ~ 10160941 (+)
XLOC_004554 psmc5 coding downstream 37808 10163585 ~ 10175487 (+)
XLOC_004555 si:ch73-103l1.2 coding downstream 53675 10179452 ~ 10193551 (+)
XLOC_004556 CU459020.1 coding downstream 85155 10210932 ~ 10211048 (+)
XLOC_004557 snu13b coding downstream 318008 10443785 ~ 10447178 (+)
XLOC_004546 NA non-coding upstream 303478 9797037 ~ 9812486 (+)
XLOC_004542 NA non-coding upstream 666233 9443721 ~ 9449731 (+)
XLOC_004536 NA non-coding upstream 1144932 8968317 ~ 8971032 (+)
XLOC_004533 NA non-coding upstream 1558805 8556636 ~ 8557159 (+)
XLOC_004565 CR450852.1 non-coding downstream 1517774 11643551 ~ 11643671 (+)
XLOC_004568 NA non-coding downstream 2289479 12415256 ~ 12415835 (+)
XLOC_004569 BX548041.1 non-coding downstream 2487558 12613335 ~ 12613451 (+)
XLOC_004579 BX649204.1 non-coding downstream 3331460 13457237 ~ 13457356 (+)

Expression


Co-expression Network