XLOC_004554 (psmc5)


Basic Information

Item Value
gene id XLOC_004554
gene name psmc5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10163585 ~ 10175487 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009057
TTCATCATTCCCTGAAGAAAACAAACCGGAAAAGCGCAATTGACTGGCGGAAGTTTGTGTTTTCAAGATGGCGCTGGACGGGATCGAGCAAATGGATATCGAGGACAGTAAAGGAGGCTCTGGTCTCCGACAGTATTACCTGTCCAAAATCGAGGAGCTTCAGTTGACAGTAAATGAGAAAAGCCAAAATCTCAGACGCCTACAGGCTCAAAGGAATGAGCTAAATGCCAAGGTGCGTCTCCTGCGTGAGGAGCTTCAGCTGCTGCAGGAACAGGGCTCTTATGTGGGAGAGGTGGTGAGAGCCATGGATAAGAAGAAAGTGCTGGTCAAGGTGCATCCAGAAGGAAAGTTTGTAGTGGATGTGGATAAGAACATTGATATTAATGATGTAACCCCAAATTGCCGTGTAGCACTTCGAAATGACAGCTACACACTTCACAAAATCCTGCCGAACAAGGTGGACCCACTGGTCTCCCTGATGATGGTGGAGAAGGTGCCAGATTCGACGTACGAGATGATCGGAGGACTGGACAAACAGATCAAGGAGATTAAAGAAGTGATTGAACTTCCAGTCAAACACCCAGAATTGTTTGAAGCTCTTGGAATTGCACAACCCAAGGGTGTGCTGCTGTATGGACCTCCTGGCACAGGAAAGACACTGTTAGCCCGAGCTGTGGCTCATCACACTGACTGCACCTTCATTCGGGTGTCAGGATCAGAGCTGGTGCAGAAGTTCATTGGAGAAGGAGCTCGTATGGTGCGCGAGCTGTTCGTCATGGCCAGGGAACACGCACCCTCCATCATCTTCATGGACGAGATCGACTCCATCGGCTCGTCTCGTCTGGAGGGAGGATCAGGAGGAGACAGTGAAGTGCAGAGGACCATGCTGGAGCTCCTCAACCAGCTGGATGGCTTCGAAGCCACCAAGAACATCAAGGTTATCATGGCAACAAACCGTATTGACATTCTCGACTCTGCGCTTCTTCGACCAGGCCGCATTGACAGGAAGATCGAATTCCCTCCTCCCAATGAAGAGGCCCGCTTGGACATTTTGAAAATCCACTCGCGTAAGATGAACCTGACACGTGGAATTAACCTACGCAAGATTGCAGAGCTGATGCCCGGAGCGTCTGGAGCTGAAGTCAAGGGCGTCTGCACAGAGGCAGGGATGTACGCCCTGAGAGAAAGGAGGGTCCACGTTACCCAGGAGGACTTTGAAATGGCAGTAGCAAAGGTGATGCAGAAAGACAGCGAGAAAAACATGTCCATCAAGAAACTCTGGAAGTAAACGTTACACTCTGTGATCTGCTTTTTTTCGTGTCTAAGTTACTTTATTGTAATCACCCAAATGtattcaaaataaatagtttgatctGTTTTCTTTCCTTCCGGAATAAAAAAAGGTTCATAATAA
>TCONS_00009058
GTGTTTTCAAGATGGCGCTGGACGGGATCGAGCAAATGGATATCGAGGACAGTAAAGGAGGCTCTGGTCTCCGACAGTATTACCTGTCCAAAATCGAGGAGCTTCAGTTGACAGTAAATGAGAAAAGCCAAAATCTCAGACGCCTACAGGCTCAAAGGAATGAGCTAAATGCCAAGGGTAAAACTCTTTTCACCCACATTTGGATGAATTTGATTTTAGGATGTCGACCTGAATATCTTAATATTCAAATGCATATCTGTTAAGCATACGCTATGAATATCAGCCGGATAACTTGACAGAGTGTGCTTTGTTTCAGTGCGTCTCCTGCGTGAGGAGCTTCAGCTGCTGCAGGAACAGGGCTCTTATGTGGGAGAGGTGGTGAGAGCCATGGATAAGAAGAAAGTGCTGGTCAAGGTGCATCCAGAAGGAAAGTTTGTAGTGGATGTGGATAAGAACATTGATATTAATGATGTAA

Function

symbol description
psmc5 Predicted to enable TBP-class protein binding activity and thyrotropin-releasing hormone receptor binding activity. Predicted to be involved in modulation of chemical synaptic transmission; positive regulation of RNA polymerase II transcription preinitiation complex assembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex; nuclear proteasome complex; and proteasome regulatory particle, base subcomplex. Predicted to be active in postsynapse. Orthologous to human PSMC5 (proteasome 26S subunit, ATPase 5).

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0045899 positive regulation of RNA polymerase II transcription preinitiation complex assembly biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0031595 nuclear proteasome complex cellular_component
GO:0031597 cytosolic proteasome complex cellular_component
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:0098794 postsynapse cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0017025 TBP-class protein binding molecular_function
GO:0031531 thyrotropin-releasing hormone receptor binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko05169 Epstein-Barr virus infection
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-030131-6547 Predicted to enable TBP-class protein binding activity and thyrotropin-releasing hormone receptor binding activity. Predicted to be involved in modulation of chemical synaptic transmission; positive regulation of RNA polymerase II transcription preinitiation complex assembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex; nuclear proteasome complex; and proteasome regulatory particle, base subcomplex. Predicted to be active in postsynapse. Orthologous to human PSMC5 (proteasome 26S subunit, ATPase 5).

Ensembl:

ensembl_id ENSDARG00000015315

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009057 False 1414 mRNA 0.48 12 10163585 10175487
TCONS_00009058 True 475 lncRNA 0.44 4 10163641 10167477

Neighbor

gene id symbol gene type direction distance location
XLOC_004553 smarcd2 coding upstream 2644 10134366 ~ 10160941 (+)
XLOC_004552 si:dkeyp-118b1.2 coding upstream 37808 10115964 ~ 10125777 (+)
XLOC_004551 slc4a1b coding upstream 63081 10053852 ~ 10100504 (+)
XLOC_004550 NA coding upstream 213096 9941133 ~ 9950489 (+)
XLOC_004549 ndufa4 coding upstream 279259 9880493 ~ 9884326 (+)
XLOC_004555 si:ch73-103l1.2 coding downstream 3965 10179452 ~ 10193551 (+)
XLOC_004556 CU459020.1 coding downstream 35445 10210932 ~ 10211048 (+)
XLOC_004557 snu13b coding downstream 268298 10443785 ~ 10447178 (+)
XLOC_004558 crym coding downstream 272739 10448226 ~ 10462503 (+)
XLOC_004559 lrrc3ca coding downstream 424117 10599604 ~ 10609781 (+)
XLOC_004546 NA non-coding upstream 351099 9797037 ~ 9812486 (+)
XLOC_004542 NA non-coding upstream 713854 9443721 ~ 9449731 (+)
XLOC_004536 NA non-coding upstream 1192553 8968317 ~ 8971032 (+)
XLOC_004533 NA non-coding upstream 1606426 8556636 ~ 8557159 (+)
XLOC_004565 CR450852.1 non-coding downstream 1468064 11643551 ~ 11643671 (+)
XLOC_004568 NA non-coding downstream 2239769 12415256 ~ 12415835 (+)
XLOC_004569 BX548041.1 non-coding downstream 2437848 12613335 ~ 12613451 (+)
XLOC_004579 BX649204.1 non-coding downstream 3281750 13457237 ~ 13457356 (+)

Expression


Co-expression Network