XLOC_004556 (CU459020.1)



Basic Information


Item Value
gene id XLOC_004556
gene name CU459020.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10210932 ~ 10211048 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00009060
ATATACTGTCATATCACCCTTCAGCCCGAGACcgcttactcactgaagctaagcaggactgaatctggtcagtatctggataggagaccacatgggaaaactaggttgctgttggaa

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000108057

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00009060 True 117 rRNA 0.47 1 10210932 10211048

Neighbor


gene id symbol gene type direction distance location
XLOC_004555 si:ch73-103l1.2 coding upstream 17381 10179452 ~ 10193551 (+)
XLOC_004554 psmc5 coding upstream 35445 10163585 ~ 10175487 (+)
XLOC_004553 smarcd2 coding upstream 49991 10134366 ~ 10160941 (+)
XLOC_004552 si:dkeyp-118b1.2 coding upstream 85155 10115964 ~ 10125777 (+)
XLOC_004551 slc4a1b coding upstream 110428 10053852 ~ 10100504 (+)
XLOC_004557 snu13b coding downstream 232737 10443785 ~ 10447178 (+)
XLOC_004558 crym coding downstream 237178 10448226 ~ 10462503 (+)
XLOC_004559 lrrc3ca coding downstream 388556 10599604 ~ 10609781 (+)
XLOC_004560 csf3a coding downstream 420218 10631266 ~ 10637172 (+)
XLOC_004561 top2a coding downstream 495724 10706772 ~ 10740236 (+)
XLOC_004550 NA non-coding upstream 260443 9941133 ~ 9950489 (+)
XLOC_004546 NA non-coding upstream 398446 9797037 ~ 9812486 (+)
XLOC_004542 NA non-coding upstream 761201 9443721 ~ 9449731 (+)
XLOC_004536 NA non-coding upstream 1239900 8968317 ~ 8971032 (+)
XLOC_004533 NA non-coding upstream 1653773 8556636 ~ 8557159 (+)
XLOC_004565 CR450852.1 non-coding downstream 1432503 11643551 ~ 11643671 (+)
XLOC_004568 NA non-coding downstream 2204208 12415256 ~ 12415835 (+)
XLOC_004569 BX548041.1 non-coding downstream 2402287 12613335 ~ 12613451 (+)
XLOC_004579 BX649204.1 non-coding downstream 3246189 13457237 ~ 13457356 (+)
XLOC_004581 CR354395.1 non-coding downstream 3446974 13658022 ~ 13658144 (+)

Expression



Co-expression Network