XLOC_004558 (crym)


Basic Information

Item Value
gene id XLOC_004558
gene name crym
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 10448226 ~ 10462503 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009062
CTCGGGAggattttttaaaagtgaaaaaactACTGGTCAAACAACTATGAGTGACTCTTGTTTTATTGAACAAATGCGAGGTCGAACGTTTGCTCAGTTACGACGAACTAATCCCCAGACTTGAGTCTGTCATGGGAAAGTTTtctaaaagggacagttcagaAATAATCCAGCCTGTGAGATCTGTGGTCCCTATACAGCCATACAATGGGTTTTTGGGTGTGATGCCTTCATATGTGGCCGCTGATGGTATTCTATGCACTAAGATGGTAACTTTCTACCAGCGTGCAGAGGGCTCCAGTTTACCTTCAACTCAAGCCACCGTCTTACTTTTTCACCCCGAGCGAGGACACATCACTGCGATCATGGATGGGGAAGCCATCACAGCCAAACGAACTGCAGCAGTGTCGGCCATATCAGCTAAACTGTTAATGCCAGCTCTTTCTGAGGTGTTGTGCATTCTTGGTTCAGGACAACAGGCTAAAAGCCATTATGATGTCTTTACAAACGTCTTCAAGTTTAAAGAGGTCCGCATTTGGAGTAGAAGGAGAGAAATGGCTCAACAGTTTGTTAATGATCTCCAAGGCCCTGTTAGAGTTTGTTCTTCAGTGAAGGAGGCTGTGATGGGAGCTGATGTAATAGTCACGGCCACAGGTGCAAGTCAACCCATACTCTTCGGAGAGTGGGTCAAACCAGGTGCCCACATAGCAGCGGTCGGCGCGTGTCGGCCAGACTGGAGGGAACTGGATGACGTGTTGATGAGAGAAGCGGTGGTCTATGTTGACAGCAGAGAGGGGGCGACGGCGGAGTCAGGAGACATCATTCTGTCTGGAGCACACATTTTCGCAGAACTTGGAGAAGTTATAAATGGATCCTTTCCTGCTCAGCGTGAGAAGACTACAGTGTTCAAGTCACTGGGAATGGGGATCCAAGACGCTGTCTCAGCCAAACTTGTGTTGGAGAAGTTGAAGAGCGAACACTGAAGAACCGAAGGCACAACTTCCTCTGATCGTACAACTTTCCGCTGTGGATTCAATGATTACAAGAGCATAAACTGCACTTACTGTTGTACACTATAAAGAGATTAATGTGTAATCGAGTTTTAGtccaagaataaaaaaaagttagtttATTCCAGTCATTTAACCTGACCTCAGGACAGTGTAAGTGCTAAAAACACAGAGTTTAGCACTAAGATGTGATTAGTCTGCGACTAGCCTTGGTCTCTGAAGGTAAGAGCATCAAACTGAGCTGAGAAAGCGGGCCAGTAGACAGCTTTGTTTATTACTCTTGCAAACTACTCCAAGTCAAACTTTGtgactttatttttaaagacatgaattaaaaaaaaaaaaaaacatctgtgttaATGATTCAAGTATAGCCTGGGATTAACTTTAAATAAACCCAGAACTGAAA
>TCONS_00009063
aaaagtgaaaaaactACTGGTCAAACAACTATGAGTGACTCTTGTTTTATTGAACAAATGCGAGGTCGAACGTTTGCTCAGTTACGACGAACTAATCCCCAGACTTGAGTCTGTCATGGGAAAGTTTtctaaaagggacagttcagaAATAATCCAGCCTGTGAGATCTGTGGTCCCTATACAGCCATACAATGGGTTTTTGGGTGTGATGCCTTCATATGTGGCCGCTGATGGTATTCTATGCACTAAGATGGTAACTTTCTACCAGCGTGCAGAGGGCTCCAGTTTACCTTCAACTCAAGCCACCGTCTTACTTTTTCACCCCGAGCGAGGACACATCACTGCGGTGAGACACACAAACCACATCTGTCTGTCTCACttaatttaattgttattctggacaaactacataaatataaatgattccGATTTTGACAAATTGTCAGAAATTATGAGTGGATCTAATTGTCAAAAAACCTCCAGATCCGTGCACTGACAttggcag

Function

symbol description
crym Predicted to enable thyroid hormone binding activity. Predicted to be involved in thyroid hormone metabolic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 40. Orthologous to human CRYM (crystallin mu).

GO:

id name namespace
GO:0042403 thyroid hormone metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0070324 thyroid hormone binding molecular_function
GO:0042562 hormone binding molecular_function

KEGG:

id description
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-070112-1782 Predicted to enable thyroid hormone binding activity. Predicted to be involved in thyroid hormone metabolic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 40. Orthologous to human CRYM (crystallin mu).

Ensembl:

ensembl_id ENSDARG00000062817

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009062 False 1419 mRNA 0.44 8 10448226 10462503
TCONS_00009063 True 505 lncRNA 0.42 2 10448242 10448831

Neighbor

gene id symbol gene type direction distance location
XLOC_004557 snu13b coding upstream 1048 10443785 ~ 10447178 (+)
XLOC_004556 CU459020.1 coding upstream 237178 10210932 ~ 10211048 (+)
XLOC_004555 si:ch73-103l1.2 coding upstream 254675 10179452 ~ 10193551 (+)
XLOC_004554 psmc5 coding upstream 272739 10163585 ~ 10175487 (+)
XLOC_004553 smarcd2 coding upstream 287285 10134366 ~ 10160941 (+)
XLOC_004559 lrrc3ca coding downstream 137101 10599604 ~ 10609781 (+)
XLOC_004560 csf3a coding downstream 168763 10631266 ~ 10637172 (+)
XLOC_004561 top2a coding downstream 244269 10706772 ~ 10740236 (+)
XLOC_004562 raraa coding downstream 490291 10952794 ~ 11157237 (+)
XLOC_004563 vps35l coding downstream 705367 11167870 ~ 11198776 (+)
XLOC_004550 NA non-coding upstream 497737 9941133 ~ 9950489 (+)
XLOC_004546 NA non-coding upstream 635740 9797037 ~ 9812486 (+)
XLOC_004542 NA non-coding upstream 998495 9443721 ~ 9449731 (+)
XLOC_004536 NA non-coding upstream 1477194 8968317 ~ 8971032 (+)
XLOC_004565 CR450852.1 non-coding downstream 1181048 11643551 ~ 11643671 (+)
XLOC_004568 NA non-coding downstream 1952753 12415256 ~ 12415835 (+)
XLOC_004569 BX548041.1 non-coding downstream 2150832 12613335 ~ 12613451 (+)
XLOC_004579 BX649204.1 non-coding downstream 2994734 13457237 ~ 13457356 (+)
XLOC_004581 CR354395.1 non-coding downstream 3195519 13658022 ~ 13658144 (+)

Expression


Co-expression Network