XLOC_004564 (si:rp71-19m20.1)


Basic Information

Item Value
gene id XLOC_004564
gene name si:rp71-19m20.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 11352630 ~ 11371291 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009072
GCTTGAGCGCCTTTGTAGGGTCCTAGAGTAGCTGCCGTCGCTGTTTAGAATGTAATGTTAAAGTAGAGCGcagtttgtttttattgcttttataaaaCGAAAAACACTGCGAGgatgttgtgttttttgtttcgAACTTGATTAGTTAATATGTTTTAACTTCTCACTCTCACTGCAGATATATGAACGAACGTAACTGAAATCCTTTACTTTAGTGTGCAGTATGTAACTTAATCGTATTGGTTTTGGCTGTTTTATGGGAAACGGTTTAAAATATCggattgtgtgtgtggatgctgttGGTGGGGCAATAAGAAGCATTTATCAGGATGTTCTCGAGTAAAGATGGTCTGATATCTGCAAACAGTTCATGGCCGTGTTCATCACAGAAGCAACTCTCTGATGTTCTCAGCACGACACTAGACAACAAACTGAACGACACACAATGGTTTCAACATGACAGGAATGAAGCTGTCTGTCTGGAGAGAGCAGAAGAGGACTCACCGTGTGTCGTCACACTTCAGTGTTCACCCGGCTCTGCGTCTGCGATCAGCAGTCTTCAGGTGGTCAGTGAAGCCCGCACTATTGAAGTGTACTCGCTGTCTGGAGAATACTGCGGCACCTGCCGTGGAGAGGAAGTTCAAATATCACACACTAATGGTTCTGAAGAAGAGAGGCATTTCTACAGGAATAATCTGATTCTGGAAAGCCCTGCTGTGTCCTGTGAGGTGAAGCTGCTGTCTCTCGGTGGCCGCTCCTCTGTGTCTGTCGCTCATGTTTGTGTGGGACTGGAGACACTGAAGGGCAGACAAGGTGGGCCGAGAGTAGAGCCAGGCATTGACCTTCAGCAGGTGCAGGCCATGATGGAGGAGATGGGCACCACCCTTTCACCGGGAGCACAAAATCTATTGGAGCTGGTGCAGTGCCAGCAAAAGAATAAATCAGACATGCTGAATGGTTTCATTCCCCTGCTCATGGGAGGAGGGGCTTTAAGCTGTCTGTCAAGAGGAGGCGGGGCTTCCAGTGCCGAAGAGGCGGAATCAGGCCCAAATCTACCCTCTGGCCTCGAGCAGCTTCTGTCTGCCAGCAACCAGAACCAGATACCCACTGCAATGTCTGCCCTGCTAAACTCGGAATCAGCCACAGTCAGCCCAGACCTGCTTCCAATGCTGCAGAGCGTATGCGGTCAGGTCACACAGCTCCGTCTGGAGGAAGCCACATCTCCAGAAAGGAAGAAGAATGGAGAGCGTGAGGGCCATATCTGCTGTGGAGGGTTTGAGAAGATTCTGGAGACGGTTGTGGAGAAGAGAATGGATGAGATGGAGAGAAGATTAAAGGAACATCTGGACCTGCGTCTGGACGCTCTTCAGCAAAGACTAGAGATCACACTTCAGCAGGCACTGTCACATAAACAACAACAGTAAACACCGTCCTGTAAAACACAGAATTAATACTTCTAACAAGATCTCAAGCATGAGATGACAACCATATTATTctataaaggtaaataaatattcAAGTCAACTATACCTATATGATAAAAATGgttctaacatttttggccagCAGTCTCTCCTGCTTTGAGTAGAAATGCTTTACAGTTTAAGAAAACAATTTCAATGATTCAGTCTTAAGTCACTGTACTGACCTGGTTTTGCATAGTAATTAACAGTTTGCTATGTCGGTTGACTAACTTAAGTTCACAAAATTATATCAGTTGATCGTCACACATCACAATCACTCATGGAACACTTCTTAGTAACAGTTGAAATACaggtaataaattattttatccaAAAGATACAACTTGTGCTGctaaaagaacattttttttctgttattctgACTATTGCAAAATAAACTGTAATGCTAACAGCTGATTTAGAAGTTGTACTTAAAACAGTTGCACCGACGTTATTGAATATGGAGTATTTGTTACTGTAAATGACCTTTGTAAATGATGTTCATATGTTGGAGAACTAACATTAAACTGCTGTTTATACTAAAAATAAtgttgcacttttattatgttagtttgtcatgtttatgttttgttaaagAACACTTTCATGCCAtccattttcttttgtttttcaaaacaaaacaaaaaaaacattgttattgtaGTTAAATGTAACAATAAATTCAACATGTTAATCAGTGCACCACAAAAACAGATTTAGTATTAACAATCCATCTTAATATGTGacgtatattttattttgaaacaaacattcagcttttttcaaatatACTGCATTTGATAGCACTTGCAAGCACCTGACACTAGCTGTGGTTCCTTCTTGTTCAATCTTTACGTTAGTTCTCCACATTATTTATAAGCAATAAACTATGTTTGCCCCCA
>TCONS_00009073
GAAGCATTTATCAGGATGTTCTCGAGTAAAGATGGTCTGATATCTGCAAACAGTTCATGGCCGTGTTCATCACAGAAGCAACTCTCTGATGCCATGACTCTTCCCATGAAGTGTTTTTGTGACTGTATTTGCACATGCATTTCTCCTAGGAATGAAGCTGTCTGTCTGGAGAGAGCAGAAGAGGACTCACCGTGTGTCGTCACACTTCAGTGTTCACCCGGCTCTGCGTCTGCGATCAGCAGTCTTCAGGTGGTCAGTGAAGCCCGCACTATTGAAGTGTACTCGCTGTCTGGAGAATACTGCGGCACCTGCCGTGGAGAGGAAGTTCAAATATCACACACTAATGGGTATATGAATAATCTGATTCTGGAAAGCCCTGCTGTGTCCTGTGAGGTGAAGCTGCTGTCTCTCGGTGGCCGCTCCTCTGTGTCTGTCGCTCATGTTTGTGTGGGACTGGAGACACTGAAGGGCAGACAAGGTGGGCCGAGAGTAGAGCCAGGCATTGACCTTCAGCAGGTGCAGGCCATGATGGAGGAGATGGGCACCACCCTTTCACCGGGAGCACAAAATCTATTGGAGCTGGTGCAGTGCCAGCAAAAGAATAAATCAGACATGCTGAATGGTTTCATTCCCCTGCTCATGGGAGGAGGGGCTTTAAGCTGTCTGTCAAGAGGAGGCGGGGCTTCCAGTGCCGAAGAGGCGGAATCAGGCCCAAATCTACCCTCTGGCCTCGAGCAGCTTCTGTCTGCCAGCAACCAGAACCAGATACCCACTGCAATGTCTGCCCTGCTAAACTCGGAATCAGCCACAGTCAGCCCAGACCTGCTTCCAATGCTGCAGAGCGTATGCGGTCAGGTCACACAGCTCCGTCTGGAGGAAGCCACATCTCCAGAAAGGAAGAAGAATGGAGAGCGTGAGGGCCATATCTGCTGTGGAGGGTTTGAGAAGATTCTGGAGACGAGAATGGATGAGATGGAGAGAAGATTAAAGGAACATCTGGACCTGCGTCTGGACGCTCTTCAGCAAAGACTAGAGATCACACTTCAGCAGGCACTGTCACATAAACAACAACAGTAA
>TCONS_00009074
TTCACTCTTACCACCTACCATCTCTGCCGGTGCCAGGACTCGAGCCTGTGACCTTCACAAGTCCAACTCTTTAAACATTAGGCCATGACTCTTCCCATGAAGTGTTTTTGTGACTGTATTTGCACATGCATTTCTCCTAGGAATGAAGCTGTCTGTCTGGAGAGAGCAGAAGAGGACTCACCGTGTGTCGTCACACTTCAGTGTTCACCCGGCTCTGCGTCTGCGATCAGCAGTCTTCAGGTGGTCAGTGAAGCCCGCACTATTGAAGTGTACTCGCTGTCTGGAGAATACTGCGGCACCTGCCGTGGAGAGGAAGTTCAAATATCACACACTAATGGTTCTGAAGAAGAGAGGCATTTCTACAGGAATAATCTGATTCTGGAAAGCCCTGCTGTGTCCTGTGAGGTGAAGCTGCTGTCTCTCGGTGGCCGCTCCTCTGTGTCTGTCGCTCATGTTTGTGTGGGACTGGA
>TCONS_00009075
GGCATTTCTACAGGAATAATCTGATTCTGGAAAGCCCTGCTGTGTCCTGTGAGGTGAAGGTAAGAAATGTGagaagtaaatccacactttcaTTGCAGGCATTCAAACTGATATATGATGTGTTTGTACAGCTGCTGTCTCTCGGTGGCCGCTCCTCTGTGTCTGTCGCTCATGTTTGTGTGGGACTGGAGACACTGAAGGGCAGACAAGGTGGGCCGAGAGTAGAGCCAGGCATTGACCTTCAGCAGGTGCAGGCCATGATGGAGGAGATGGGCACCACCCTTTCACCGGGAGCACAAAATCTATTGGAGCTGGTGCAGTGCCAGCAAAAGAATAAATCAGACATGCTGAATGGTTTCATTCCCCTGCTCATGGGAGGAGGGGCTTTAAGCTGTCTGTCAAGAGGAGGCGGGGCTTCCAGTGCCGAAGAGGCGGAATCAGGCCCAAATCTACCCTCTGGCCTCGAGCAGCTTCTGTCTGCCAGCAACCAGAACCAGATACCCACTGCAATGTCTGCCCTGCTAAACTCGGAATCAGCCACAGTCAGCCCAGACCTGCTTCCAATGCTGCAGAGCGTATGCGGTCAGGTCACACAGCTCCGTCTGGAGGAAGCCACATCTCC

Function

symbol description
si:rp71-19m20.1 Orthologous to human C10orf88 (chromosome 10 open reading frame 88).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3509 Orthologous to human C10orf88 (chromosome 10 open reading frame 88).

Ensembl:

ensembl_id ENSDARG00000089828

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009072 False 2365 mRNA 0.41 6 11352630 11371291
TCONS_00009073 False 1077 mRNA 0.52 7 11352944 11370350
TCONS_00009074 False 470 mRNA 0.51 3 11356592 11359390
TCONS_00009075 True 622 lncRNA 0.53 2 11359201 11363061

Neighbor

gene id symbol gene type direction distance location
XLOC_004563 vps35l coding upstream 153854 11167870 ~ 11198776 (+)
XLOC_004562 raraa coding upstream 195393 10952794 ~ 11157237 (+)
XLOC_004561 top2a coding upstream 612394 10706772 ~ 10740236 (+)
XLOC_004560 csf3a coding upstream 715458 10631266 ~ 10637172 (+)
XLOC_004559 lrrc3ca coding upstream 742849 10599604 ~ 10609781 (+)
XLOC_004565 CR450852.1 coding downstream 272260 11643551 ~ 11643671 (+)
XLOC_004566 waplb coding downstream 278855 11650146 ~ 11763658 (+)
XLOC_004567 grid1b coding downstream 741093 12112384 ~ 12833736 (+)
XLOC_004568 NA coding downstream 1043965 12415256 ~ 12415835 (+)
XLOC_004569 BX548041.1 coding downstream 1242044 12613335 ~ 12613451 (+)
XLOC_004556 CU459020.1 non-coding upstream 1141582 10210932 ~ 10211048 (+)
XLOC_004550 NA non-coding upstream 1402141 9941133 ~ 9950489 (+)
XLOC_004546 NA non-coding upstream 1540144 9797037 ~ 9812486 (+)
XLOC_004542 NA non-coding upstream 1902899 9443721 ~ 9449731 (+)
XLOC_004536 NA non-coding upstream 2381598 8968317 ~ 8971032 (+)
XLOC_004579 BX649204.1 non-coding downstream 2085946 13457237 ~ 13457356 (+)
XLOC_004581 CR354395.1 non-coding downstream 2286731 13658022 ~ 13658144 (+)

Expression


Co-expression Network