XLOC_004568


Basic Information

Item Value
gene id XLOC_004568
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 12415256 ~ 12415835 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010724
agaacaacagaccttccaccgtttttataaggtttgcagactgattgctaattgaagatttgttgTTAAAAGAGTGTTAAACcagtgcttcagtgatttcaaacTGATCTTGGTggtttctaatggttaggaatagatggtttctgtttggttaccatagctgAAACAaaggagtttggactgcttgaataaCATCTGTgttaattatttgaaaaaaatattagggAAAATGTGTCAATCCAACAAGAaagagtttacacatttgcaggacatgtcttctgctctgctgggatagtgatgaaGAAAATGGAGTGGatcctagtttctttaaccaggtcaaagcaaacaagaaaaactgcaAATGTGTTGAGATTTttacacatataataataattgttgtttcgATACCTTGAATTTGGAGGTGGATGTCCGAGGTTTGGTAACACAATCATATTCCACAAGTTCATGCGgttattaaagggtcacaaaacaccaaaacacattttttgagatgttgacagtcatatatatgtcccacgttattaaaaacactattaggacacatatttaactaaaaagt

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0048880 sensory system development biological_process
GO:0098693 regulation of synaptic vesicle cycle biological_process
GO:2000300 regulation of synaptic vesicle exocytosis biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0051049 regulation of transport biological_process
GO:0003008 system process biological_process
GO:1903305 regulation of regulated secretory pathway biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:1902803 regulation of synaptic vesicle transport biological_process
GO:0150063 visual system development biological_process
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010724 True 580 lncRNA 0.34 1 12415256 12415835

Neighbor

gene id symbol gene type direction distance location
XLOC_004566 waplb coding upstream 651598 11650146 ~ 11763658 (+)
XLOC_004565 CR450852.1 coding upstream 771585 11643551 ~ 11643671 (+)
XLOC_004564 si:rp71-19m20.1 coding upstream 1043965 11352630 ~ 11371291 (+)
XLOC_004563 vps35l coding upstream 1216480 11167870 ~ 11198776 (+)
XLOC_004562 raraa coding upstream 1258019 10952794 ~ 11157237 (+)
XLOC_004569 BX548041.1 coding downstream 197500 12613335 ~ 12613451 (+)
XLOC_004570 patl2 coding downstream 676007 13091842 ~ 13106963 (+)
XLOC_004571 cmn coding downstream 702705 13118540 ~ 13164249 (+)
XLOC_004572 paqr4b coding downstream 748871 13164706 ~ 13176918 (+)
XLOC_004573 ppp1cab coding downstream 790120 13205955 ~ 13223449 (+)
XLOC_004556 CU459020.1 non-coding upstream 2204208 10210932 ~ 10211048 (+)
XLOC_004550 NA non-coding upstream 2464767 9941133 ~ 9950489 (+)
XLOC_004546 NA non-coding upstream 2602770 9797037 ~ 9812486 (+)
XLOC_004542 NA non-coding upstream 2965525 9443721 ~ 9449731 (+)
XLOC_004579 BX649204.1 non-coding downstream 1041402 13457237 ~ 13457356 (+)
XLOC_004581 CR354395.1 non-coding downstream 1242187 13658022 ~ 13658144 (+)
XLOC_004582 BX640453.1 non-coding downstream 1324381 13740216 ~ 13742676 (+)
XLOC_004589 NA non-coding downstream 2325317 14741152 ~ 14744702 (+)

Expression


Co-expression Network