Fish Transcriptome and Expression Database

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model fish

XLOC_004569 (BX548041.1)

Basic Information

Item	Value
gene id	XLOC_004569
gene name	BX548041.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007123.7
NCBI id	CM002896.2
chromosome length	49182954
location	12613335 ~ 12613451 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009079
ATCCActgccatatcaccctgcagcccaagccaggttactcactaaagctaagcagggctgagcctggtcagtacctggatgggagaccacatgggaaaactagatgACTGTTGAAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000107646

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00009079	True	117	rRNA	0.51	1	12613335	12613451

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_004568	NA	coding	upstream	197500	12415256 ~ 12415835 (+)
XLOC_004566	waplb	coding	upstream	849677	11650146 ~ 11763658 (+)
XLOC_004565	CR450852.1	coding	upstream	969664	11643551 ~ 11643671 (+)
XLOC_004564	si:rp71-19m20.1	coding	upstream	1242044	11352630 ~ 11371291 (+)
XLOC_004563	vps35l	coding	upstream	1414559	11167870 ~ 11198776 (+)
XLOC_004570	patl2	coding	downstream	478391	13091842 ~ 13106963 (+)
XLOC_004571	cmn	coding	downstream	505089	13118540 ~ 13164249 (+)
XLOC_004572	paqr4b	coding	downstream	551255	13164706 ~ 13176918 (+)
XLOC_004573	ppp1cab	coding	downstream	592504	13205955 ~ 13223449 (+)
XLOC_004574	atp2a1l	coding	downstream	630698	13244149 ~ 13263658 (+)
XLOC_004556	CU459020.1	non-coding	upstream	2402287	10210932 ~ 10211048 (+)
XLOC_004550	NA	non-coding	upstream	2662846	9941133 ~ 9950489 (+)
XLOC_004546	NA	non-coding	upstream	2800849	9797037 ~ 9812486 (+)
XLOC_004579	BX649204.1	non-coding	downstream	843786	13457237 ~ 13457356 (+)
XLOC_004581	CR354395.1	non-coding	downstream	1044571	13658022 ~ 13658144 (+)
XLOC_004582	BX640453.1	non-coding	downstream	1126765	13740216 ~ 13742676 (+)
XLOC_004589	NA	non-coding	downstream	2127701	14741152 ~ 14744702 (+)
XLOC_004590	NA	non-coding	downstream	2202149	14815600 ~ 14815945 (+)

Expression

Co-expression Network