XLOC_004571 (cmn)



Basic Information


Item Value
gene id XLOC_004571
gene name cmn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 13118540 ~ 13164249 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00009085
GGTTTATAAACTTAGTTGAGCACAGTATCTGTTCCCTGTTCGCTTTTGTTTCGATTTTCTGTTTCTTTCCATTTCCCCTATAGATATATCCAAAATGTTGAGATGGACAATTCTAAGGATGATGTTATTGCTGTGGATGACAAGAGTAACACTTCAGGGTGGCACAGgGTACCAACCTCAAAAATCAAATGGCAATGCAGCACCGATTTCACCAGGAGGTTATGGTTCAAATAACAATGCAGCAAATCTGAAGGGATATGGTGTTTATGGAGGTGCACAAAATAAGCCTGCAAATAGAGGTCATCTCCCACATGGTTATGGAAATGGGAATACTAATGGTAACAATGGCTACAAAGCTCCATCATATGGGGGCTATAGCAATTTATTGGGCACTCATCCCCGAAAAGGAGCTGGTTTAGGTTTTGGTGCTGGGCCTGCAGCAACTAAGGGACAAGGTTCAAATCCCGGagGCTCCTCACAGTATATGGGAAACACAAATGGAGGAACAAAGGGACCTAAACCAGGATATGGTGCTCAAGCTGGGCAAACCAATGGACAAATAGCCAAGCCTAATGGTTATGGGGGATATCCTAATGGAGGTGCAGCTAACCAGCCTAAAACAGGATTTTCTCAGTACATGGGGTATCCTAATGGTGGAACTAAGGGACCTAAACCAGGGTATGGAGGATATCCTAATGGAGGTGCAGCTGTCCAGCCTGGTACAGGGTCTTCACAATACAAGGGATTTCCCAGTGGTGGAATCAAAGGACCTAATCCAGGATTTGCTGCTAATGCTGGAGCATCTAATGAAAAAGGAGTCAAGCCTAATGGATATGGAGGATATCCAAATGGAGGTGCAGCTAACCAGCCTAATGGAGgCTCCTCACACTATATGGGTTATCCCAACGGTGGAACCAAGGGACCTAAACCAGGATATGGTGCTAATGCTGGACCTTCAGCTGGACAAGTTGCCAAGCCTAATGGATATGGAGGATATCCCAATGCAGGTGCAACTAACCAGCCAAATGGGGGGCCATTTCAAAATATGGGTTACCCCAATGGTGGAACCAAGGGCCCTAAACCAGGATATGGTGCTAAAGCTGGACCCTCGGCTGGACATGTAGCCAAGCCTAATGGAAATGGAGGATATCCTAATGGAGGCGCAACTAGTCAACATAATGGAGGCTCTTCTCAATTTATGGGTTATCCCAATGGAGGAACCAAGGGACCTAAATCAGGATATGGTGCGAATGCTGGACCTTCAGCTGGACAAGTAGCCAAGCCTAATGGAAATGGAAGATATCCTATTGGAGGCGTTGCAAACCAGCCTAATAGGGGATCCTCTCAAAATATGGGCTATCCCAATGGCAGAACTAAGGGACCTAAACAAGGATATGGAGGATATCCTAATGGAGGCGCAGCTAACCAGCCTAATGGGGGATCCACTCAAAATATGGGTTATTCCAATGGTGGAACCAAGGGACCTAAACAagGATATGGTGCTAATGCTGGACCTTCAGCTGGACAAGTAGCCAAGCCTAATGGATATGGAGGATATCCTAATGGTGGTGCAACTAACCAGCCTAATGGGGGCTCCTCTCAATATATGGGTTATCCCAATGGTGGAGCCAAGGGACCTAAAGCAGGATATGGTGCTAAATCTGGACCTTCATCTGGACAAGTATCCAAGCCTAATGGCTCCTCTCAATATATGGGGTATCCCAATGGTGGAACCAATGGACTTAAACCAGGATATGGAGCCAAAGCTAGAACCACGTACGGACAAGGAGCCAAGCCTCAGAATgGTTACGGTGTTCCTGGATATACGTCAAAAGGACCTAAAGCAGCTAATTCAGGGTATATGCCTGTAATAACTGGAAATAAGGGTGCTTCAATTGGAAAGGGGCCAAAGGGGGAGATTTTAAGTGCTGAAGCACCAAGTCAAGCACCACTGTCCAACACAAAGGGTGTTCTACCAGTTGCTCAACAAGAACCAGTTACAGGATTACTTCCAAATCAGGGAACTAAAGGCCTTCCAGTTCTGCAACAAACAAAGGGACAAATTCTTCAAGCATCATTACCACAGAGTAAAACCCAAAACTCTATGGTACCTCAGTTTGCTTCAAACCCATTTATGCAGGGCCCTAGCTCTTACAAACCTAGTAAAATGTATAAACCACCAACATCTACAATTCCAATTGAAAAGCCAGAGATTCCAGTAATTCCTCAGTCAGTGCCTGCACCAGAATCTGCGTTCATTCCTCAAACATCACAGACAACTCCACTAGAGCAGGAGCAAGTCCTTTCATTGGAACAGAAAAGTCAAGTGACCGCACAACCAGTTACACAACAAGGCAGCATTTCTTCTCAGGCGGCTCAATCAACTCCAGTTTTGCAGCAAGCAGAAATACAGTCAAACCCTGCTTTGCCTCAGTTGAAGAATCCAACCACAACAAATCCTGaactCACTGGTCTAGAACAACCTAATGGTCAGGTGCAGGGTGCTGTGCCGGCAAAGCCTGACTGTGGACCTGAAGGACGACCTAATGGACAATGGGTCAAACTTACAAATCCTGGGTTTGGGTATCCCAATGGAAAAGGAGAAGGGTTATCACAACCAgGCTTTGGAGCAGGAATTGGTGGTTATCCAACTCAGGGCATGAACAATGGCCACAAAGCAGGATATGGAGGCTATGGAAACCAATTAAAAAACCACGCTGGACTACAAGGTGGACCACCAGCACGATTGGGAACAAAGGGAAAATCTCAAACAAAATATGGAATTGGTGGACTTCCCTTTGGTGGTTCCCCCAGTGGATATCAGTCCAACCCCTACGGACAATATGGTAATGATGGTCAGCGATATGGAGCTAAACCCTACAATCCTAAAGCACCAGGAAAATACGGATATGGTAGTTTACCATACAACTCTCAGGCTTTTCCAGAATCAGTTGCCAGATCACCTGATTTTGGAGGGTTTCCCTACAATGGCCAGCCACTTGGATATGGCAGTGGCAAATCCACTGGCAAATATgGACAAAAGGGTCCTCAATATGGTGGTCAGTCCCTTGGTCACGGGCCTGATGCAATTTCTGGAAAATACGGGTCTCCTGAATCCTTGTACACACCAGAAACGGTCAATCTTGGAGGCAATGCCAAATCAACTAAATATGGTAATCCAGCAGTATCATATGAACTCCTCGGCCCTGTGACTGATGGCCAATCTGTTGAAGaaaacagaagcATTGAGACTCTGCACCAAGGTCCTGAGATTGATGGACAAAAAGCTGTTGACAACTTTGGAGATGGAGAGATTCCACCCCATCCTGATGTTCCAGGAGCAGGAGAGGCGAATGCACAATCCACAGAAAAATAtgGAACTGAGGATTATAATGCTGGAAAACCACAACCAGAAGCTGTTTCCTTCCCTGCTGTTCCAACTGTGGGCCCTGCTGTCACCTCATTAGACACCACTCTCTCGCTGGACGGTTCCTCTCCGGTTCCAGTCTCTGTACCTGATGCTGTTCATGAGGTGCCTGTGTCCCCCATACTCCCTCAGCCTGACCTCCCCACTCTAATGCTGCAACCAGCACCACCACAACAGATCCAAATACAGCAGCACCTCAAGCTTCATTTTCAACCCCACAGCAACTCCCAGACAGGAAAGGAAGGCAAATACAAATTAAGTGGATTCTTTGGAAATAAATACCAAGGGTAATTTTGAAGATCAAACTGCAAAACTGTGGTTTTCACTCGATGTCTCTATTTTACACTTCTTTTTTTGGTGAATGTTGTACATTTTCTGTTTCTTAATGGGAATATTTTGTTAAACTCTAATTTTGTGTTTTGATTccttacaataaaaataaacagctgCTTGTACAAAAGACATTTTAGATTAAATATAACTATAGCTATATTGCATATTTCtgtctttttgcattttttattccATAACTTACAAACACGTacagtttttttctgtattgttttatgtagatcagtttttttaaatactattatttgtttctaaaagccattgttatttatttctttagtaTCCTGGGGCAAGGCCCATGAATggttttgaataaataaaaatgtatattaa
>TCONS_00009086
CCCTGTTCGCTTTTGTTTCGATTTTCTGTTTCTTTCCATTTCCCCTATAGATATATCCAAAATGTTGAGATGGACAATTCTAAGGATGATGTTATTGCTGTGGATGACAAGAGTAACACTTCAGGGTGGCACAGgGTACCAACCTCAAAAATCAAATGGCAATGCAGCACCGATTTCACCAGGAGGTGTTTATGGAGGTGCACAAAATAAGCCTGCAAATAGAGGTCATCTCCCACATGGTTATGGAAATGGGAATACTAATGGTAACAATGGCTACAAAGCTCCATCATATGGGGGCTATAGCAATTTATTGGGCACTCATCCCCGAAAAGGAGCTGGTTTAGGTTTTGGTGCTGGGCCTGCAGCAACTAAGGGACAAGGTTCAAATCCCGGagGCTCCTCACAGTATATGGGAAACACAAATGGAGGAACAAAGGGACCTAAACCAGGATATGGTGCTCAAGCTGGGC

Function


symbol description
cmn Acts upstream of or within embryonic skeletal system development. Located in collagen-containing extracellular matrix. Is expressed in notochord and notochord posterior region.

GO:

id name namespace
GO:0048706 embryonic skeletal system development biological_process
GO:0062023 collagen-containing extracellular matrix cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-000208-9 Acts upstream of or within embryonic skeletal system development. Located in collagen-containing extracellular matrix. Is expressed in notochord and notochord posterior region.

Ensembl:

ensembl_id ENSDARG00000055527

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00009085 False 4111 mRNA 0.44 54 13118540 13164249
TCONS_00009086 True 470 mRNA 0.45 8 13118573 13130103

Neighbor


gene id symbol gene type direction distance location
XLOC_004570 patl2 coding upstream 11577 13091842 ~ 13106963 (+)
XLOC_004567 grid1b coding upstream 284804 12112384 ~ 12833736 (+)
XLOC_004569 BX548041.1 coding upstream 505089 12613335 ~ 12613451 (+)
XLOC_004568 NA coding upstream 702705 12415256 ~ 12415835 (+)
XLOC_004566 waplb coding upstream 1354882 11650146 ~ 11763658 (+)
XLOC_004572 paqr4b coding downstream 457 13164706 ~ 13176918 (+)
XLOC_004573 ppp1cab coding downstream 41706 13205955 ~ 13223449 (+)
XLOC_004574 atp2a1l coding downstream 79900 13244149 ~ 13263658 (+)
XLOC_004575 irf9 coding downstream 118548 13282797 ~ 13306883 (+)
XLOC_004576 psme2 coding downstream 154883 13319132 ~ 13331980 (+)
XLOC_004565 CR450852.1 non-coding upstream 1474869 11643551 ~ 11643671 (+)
XLOC_004556 CU459020.1 non-coding upstream 2907492 10210932 ~ 10211048 (+)
XLOC_004550 NA non-coding upstream 3168051 9941133 ~ 9950489 (+)
XLOC_004579 BX649204.1 non-coding downstream 292988 13457237 ~ 13457356 (+)
XLOC_004581 CR354395.1 non-coding downstream 493773 13658022 ~ 13658144 (+)
XLOC_004582 BX640453.1 non-coding downstream 575967 13740216 ~ 13742676 (+)
XLOC_004589 NA non-coding downstream 1576903 14741152 ~ 14744702 (+)
XLOC_004590 NA non-coding downstream 1651351 14815600 ~ 14815945 (+)

Expression



Co-expression Network