G50 (LOC104942424)



Basic Information


Item Value
gene id G50
gene name LOC104942424
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 370651 ~ 386648 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU100
agAGGAGACCCGCCCGGTGGACCACTGTCAGAGGGGAAGCCACGACTGCGACGCTGCCGACCGGCGCTCTGCAGCTACACCGGAGCCTCGGCGTTCGTCTGCTCCTGCCTGTCGGGGTTCGTGGGCGACGGCCGGGTGTGTCAGGACGTCGACGAGTGTCAGCAGGACCGCTGCCACCACGACGCCTTCTGCTCCAACACGCAGGGCTCCTACAACTGCCAGTGCCACCCCGGTTTCCACGGCGACGGCTTCCAGTGCCGCCCGGCGACCTCAGagCGCGAGAAGACACCGTGCGAGCGCCACAGAGAGAGCGCCCAGACCGCCACCTCCGGCTCCGGCTCCGGCATCTTCTCCTTCTTCCGTCCGCGGCCGGCCGTCGGCCAGTACGTCCCGCAGTGCGACCGCCACGGAGCCTACGAGCCCACGCAGTGCCACGCCGCCATCGGGCAGTGCTGGTGCGTGGACGCCGGCGGACAGGAAGTCCCCAACACCCGCACGGGCCCCGGCAGCACCCCTCTGTgTATCGACCAGGCGGTGACGCCGGCTCCGGTGGGTCCGACCCCGCGGCCCGACGTCCACCCCGTTGCCCCGGGAACGCACCTGCTGTTCGCTCAGAGCGGGAAGATCGAGCACGTCCCTCTGGACGGGTACAACATCAGGAAGGAGGAGGCCAAACCTCTGCTGCACATCCCCGTGAGGCCACATTAGAT

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU100 True 710 lncRNA 0.50 4 370651 386648

Neighbor


gene id symbol gene type direction distance location
rbm34 LOC103399136,LOC103383372 coding downstream 43544 430192 ~ 439191 (+)
LOC120560448 NA coding downstream 65328 451976 ~ 453564 (+)
LOC120566701 NA coding downstream 71730 458378 ~ 462863 (+)
LOC120566520 NA coding downstream 84097 470745 ~ 473664 (+)
LOC120566531 NA coding downstream 99964 486612 ~ 494282 (+)
G49 NA non-coding upstream 1354 369028 ~ 369297 (+)
G48 NA non-coding upstream 24744 345628 ~ 345907 (+)
G36 NA non-coding upstream 56622 313130 ~ 314029 (+)
G2 NA non-coding upstream 61558 229364 ~ 309093 (+)
G55 NA non-coding downstream 23093 409741 ~ 410462 (+)
G221 NA non-coding downstream 135884 522532 ~ 522989 (+)
G261 NA non-coding downstream 299797 686445 ~ 692229 (+)
G270 LOC103372508 non-coding downstream 421913 808561 ~ 811947 (+)
G195 NA non-coding downstream 498459 885107 ~ 1195250 (+)
rrp36 rrp36 other upstream 49872 291233 ~ 320779 (+)
fbxo3 NA other upstream 132912 70004 ~ 237739 (+)
LOC120560073 LOC103372506,LOC102203670,LOC101482513,LOC102296948 other upstream 146055 200413 ~ 224596 (+)
LOC120560058 NA other upstream 188348 158391 ~ 182303 (+)
G11 NA other upstream 296982 23490 ~ 73669 (+)
G184 NA other downstream 91323 477971 ~ 481890 (+)
G176 LOC104946033 other downstream 196742 583390 ~ 598207 (+)
LOC120566394 NA other downstream 321505 708153 ~ 753762 (+)
LOC120566368 NA other downstream 521192 907840 ~ 1012869 (+)
LOC120566414 LOC104946033 other downstream 539658 926306 ~ 1011615 (+)

Expression



Co-expression Network