si:ch211-243a20.3 (si:ch211-243a20.3,LOC107676841,LOC107712233,LOC105901553)


Basic Information

Item Value
gene id si:ch211-243a20.3
gene name si:ch211-243a20.3,LOC107676841,LOC107712233,LOC105901553
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 24665385 ~ 24669297 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU10020
ATCGGACACATATACCTGTCTGTTCCACAAAGGGGTGAAGAAGAGGAGACCAAAACGGGCTGCGAGACGAGGGTGGAGAGAGCataagagaagagaagagagagcgagaggggaAGAAATAAGTAGAAAAGACCAGGGCAGCGGCAGAGTGGAGAGGCGAGAGAAGCATCTGATATTCAAGCTTGATCGGAGGACTTCCTGCTGAGAATTGAAGCATCAACATAATTTTAAAGTTGGTGCGCCCTCTGTCCGAGTCCGTCAACGACCTGTTCAGAGAAGTGTCCCTGCTGCGCAGGCGCATCACCGAACTCTCTCATCGCCTAGCAACCCTGGAACCGTTCCTCCGTCACCACGGCTACTGGGaggtgggggaggaggagggaggcggCTTGAGAGGAGAGGTGGCGAGCCTGGCCCGGTACAGCCCGAGGACCCCGGGGGGAGCGGGTCCACCGAGGGGGAGCCGGGTGGTGAGGAGGAGACGGGTGAGAGTCCTGAAGAAAGGGGGAGTGAAGCTGCTTCAGAGAGAGAGCTAGACAGTGACACACTGATGGAGGGAGGTGAAGAgaaagtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtagaaGTACAGAGAGAGCTTTTGCAAATATTATATAATGTAAGAAATCCATTTTTTAACTGTAtagatttcatttttaaaaataacaGCCTAGACATGACAATACAATATAGACACTGCTTGAGATCAGAGATGGTGATTATGTTTTGTATATCTTTAATAAACTCTTTTTATGATTAGCACA
>XM_039821437.1
TGAGAGTTATCTTAAAGAAGAGGACGTGCCACACATCTGGCAGCAGCTGGATGTCATAGTGTGTGCCAGAGAAAGAGTAGGAGTTGGGCGTGTGTTGGAGTGTAAAGAGCTCTCCACAAATAAGGAGTTTTTAAACTCAGGACTGAACCTGCCACACTCTCCTCCAAATTATATTACAGCTGCGAGACGAGGGTGGAGAGAGCataagagaagagaagagagagcgagaggggaAGAAATAAGTAGAAAAGACCAGGGCAGCGGCAGAGTGGAGAGGCGAGAGAAGCATCTGATATTCAAGCTTGATCGGAGGACTTCCTGCTGAGAATTGAAGCATCAACATAATTTTAAAGTTggGGAAGTGTCTGTCTGTTCGTAATGGCCCCTCCTTCTTTGTTGATGCTGCTGATGGTGGTTGCCATGGCAACTGGGGTGGATTTAGTCAGCGAGGAGAATGAACTGGATTATGGATACTGGAACTACAGAGAGGGAGCTGATAGTGTCAATGTGGCCTCAGTGCGCAGTGTGACCAGAGTTTTAGACGCCTGGGGAAAACGCATCTTCCGTGAAATCAAGACTTTGCTGCACTCTCAGCCCAGCACACTGCTGCCTGACTACTCCAGGGTGCGCCCTCTGTCCGAGTCCGTCAACGACCTGTTCAGAGAAGTGTCCCTGCTGCGCAGGCGCATCACCGAACTCTCTCATCGCCTAGCAACCCTGGAACCGTTCCTCCGTCACCACGGCTACTGGGaggtgggggaggaggagggaggcggCTTGAGAGGAGAGGTGGCGAGCCTGGCCCGGTACAGCCCGAGGACCCCGGGGGGAGCGGGTCCACCGAGGGGGAGCCGGGTGGTGAGGAGGAGACGGGTGAGAGTCCTGAAGAAAGGGGGAGTGAAGCTGCTTCAGAGAGAGAGCTAGACAGTGACACACTGATGGAGGGAGGTGAAGAgaaagtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtagaaGTACAGAGAGAGCTTTTGCAAATATTATATAATGTAAGAAATCCATTTTTTAACTGTAtagatttcatttttaaaaataacaGCCTAGACATGACAATACAATATAGACACTGCTTGAGATCAGAGATGGTGATTATGTTTTGTATATCTTTAATAAACTCTTTTTATGATTAGCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107676841 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10020 False 816 lncRNA 0.37 3 24665385 24669297
XM_039821437.1 True 1202 mRNA 0.50 4 24665387 24669230

Neighbor

gene id symbol gene type direction distance location
mb LOC103353989,LOC102219983,LOC107102974 coding downstream 205304 24458178 ~ 24460081 (-)
smdt1b LOC103137708,LOC103468189,LOC106960370,LOC102220931,LOC100698144,LOC101478003,LOC102793438 coding downstream 227962 24435927 ~ 24437423 (-)
LOC120569117 LOC103353953 coding downstream 256257 24398474 ~ 24409128 (-)
LOC120561906 LOC100698408,LOC104964054,LOC103353946 coding downstream 282074 24379120 ~ 24383311 (-)
rnaseh2a rnaseh2a coding downstream 288496 24373364 ~ 24376889 (-)
emp1 LOC104944976,LOC103354081,LOC103383794 coding upstream 18868 24688165 ~ 24693367 (-)
slc34a2a LOC103354185,LOC108241574 coding upstream 120701 24789998 ~ 24805687 (-)
rhbdd2 NA coding upstream 147736 24817033 ~ 24818746 (-)
LOC120557339 NA coding upstream 157112 24826409 ~ 24828776 (-)
LOC120557916 LOC104968030 coding upstream 162864 24832161 ~ 24836579 (-)
G7352 grin2b,LOC106927073,LOC103137761 non-coding downstream 13164 24651943 ~ 24652221 (-)
G7351 LOC106952308,LOC103137761,LOC106515218,LOC103468798,LOC106927073 non-coding downstream 22282 24642823 ~ 24643103 (-)
G7350 NA non-coding downstream 42829 24622350 ~ 24622556 (-)
G7349 NA non-coding downstream 47123 24617946 ~ 24618262 (-)
G7348 NA non-coding downstream 79066 24586026 ~ 24586319 (-)
G7383 pde6h,LOC101074909,LOC103354149,LOC106533555 non-coding upstream 92617 24761914 ~ 24763690 (-)
G7388 NA non-coding upstream 142165 24811462 ~ 24812084 (-)
G7506 LOC103353170,LOC104960336 non-coding upstream 584009 25253306 ~ 25254219 (-)
G7551 NA non-coding upstream 806146 25475443 ~ 25512353 (-)
LOC120568431 NA non-coding upstream 855558 25524855 ~ 25525679 (-)
G7323 NA other downstream 130069 24532236 ~ 24535316 (-)
LOC120562828 elof1,LOC103353603,LOC103384163,LOC100701647,LOC101173766 other downstream 779623 23882745 ~ 23885762 (-)
palm3 NA other downstream 854364 23772856 ~ 23811021 (-)
G7071 NA other downstream 896544 23752026 ~ 23768841 (-)
si:ch211-207j7.2 NA other downstream 919354 23734364 ~ 23746031 (-)
LOC120543531 pde6h,LOC101074909,LOC104944980,LOC103354149,LOC107382209,LOC103383788,LOC101158417,LOC106533555 other upstream 86635 24755932 ~ 24759618 (-)
G7589 NA other upstream 1028964 25698261 ~ 25699557 (-)
G7603 LOC103353181 other upstream 1114647 25783944 ~ 25788229 (-)
G7722 LOC103354873 other upstream 1332227 26001524 ~ 26009217 (-)
polq LOC104947247,LOC104947243,LOC106593755 other upstream 1406100 26075397 ~ 26094244 (-)

Expression


Co-expression Network