G7352 (grin2b,LOC106927073,LOC103137761)


Basic Information

Item Value
gene id G7352
gene name grin2b,LOC106927073,LOC103137761
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 24651943 ~ 24652221 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU10027
GGACAAAGGTCAGacctaaaataaaacacaagcacacTCACTCGGCTAATGGAGAAGGTGGCCCCGGGCTGTCCCGAGCACACGCCCATGAAGCAGAAGCGCAGCTGCCAGTAGAACCAGTGTTCACAGATGAAGGTGATTAATGAGAGAATCATGGCGGCCCCAAGCATGTAGAAGACCCCAGCCATGTTGTCTACGTCCAGCTGACTGCTCATCACCTCATTCTTCTCATTGTGGCAGATGCCTGTCAGCCACAGGGCCTCAAACTCCTCCATATCA

Function

symbol description
grin2b Enables NMDA glutamate receptor activity; glutamate-gated calcium ion channel activity; and glycine binding activity. Involved in calcium ion transmembrane import into cytosol and response to ethanol. Located in plasma membrane. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex. Implicated in several diseases, including alcohol use disorder; autosomal dominant non-syndromic intellectual disability 6; bipolar disorder; developmental and epileptic encephalopathy 27; and neurodegenerative disease (multiple). Biomarker of Alzheimer's disease; temporal lobe epilepsy; and vascular dementia.

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10027 True 279 lncRNA 0.61 1 24651943 24652221

Neighbor

gene id symbol gene type direction distance location
mb LOC103353989,LOC102219983,LOC107102974 coding downstream 191862 24458178 ~ 24460081 (-)
smdt1b LOC103137708,LOC103468189,LOC106960370,LOC102220931,LOC100698144,LOC101478003,LOC102793438 coding downstream 214520 24435927 ~ 24437423 (-)
LOC120569117 LOC103353953 coding downstream 242815 24398474 ~ 24409128 (-)
LOC120561906 LOC100698408,LOC104964054,LOC103353946 coding downstream 268632 24379120 ~ 24383311 (-)
rnaseh2a rnaseh2a coding downstream 275054 24373364 ~ 24376889 (-)
emp1 LOC104944976,LOC103354081,LOC103383794 coding upstream 35944 24688165 ~ 24693367 (-)
slc34a2a LOC103354185,LOC108241574 coding upstream 137777 24789998 ~ 24805687 (-)
rhbdd2 NA coding upstream 164812 24817033 ~ 24818746 (-)
LOC120557339 NA coding upstream 174188 24826409 ~ 24828776 (-)
LOC120557916 LOC104968030 coding upstream 179940 24832161 ~ 24836579 (-)
G7351 LOC106952308,LOC103137761,LOC106515218,LOC103468798,LOC106927073 non-coding downstream 8840 24642823 ~ 24643103 (-)
G7350 NA non-coding downstream 29387 24622350 ~ 24622556 (-)
G7349 NA non-coding downstream 33681 24617946 ~ 24618262 (-)
G7348 NA non-coding downstream 65624 24586026 ~ 24586319 (-)
G7343 NA non-coding downstream 94246 24557478 ~ 24557697 (-)
G7383 pde6h,LOC101074909,LOC103354149,LOC106533555 non-coding upstream 109693 24761914 ~ 24763690 (-)
G7388 NA non-coding upstream 159241 24811462 ~ 24812084 (-)
G7506 LOC103353170,LOC104960336 non-coding upstream 601085 25253306 ~ 25254219 (-)
G7551 NA non-coding upstream 823222 25475443 ~ 25512353 (-)
LOC120568431 NA non-coding upstream 872634 25524855 ~ 25525679 (-)
G7323 NA other downstream 116627 24532236 ~ 24535316 (-)
LOC120562828 elof1,LOC103353603,LOC103384163,LOC100701647,LOC101173766 other downstream 766181 23882745 ~ 23885762 (-)
palm3 NA other downstream 840922 23772856 ~ 23811021 (-)
G7071 NA other downstream 883102 23752026 ~ 23768841 (-)
si:ch211-207j7.2 NA other downstream 905912 23734364 ~ 23746031 (-)
si:ch211-243a20.3 si:ch211-243a20.3,LOC107676841,LOC107712233,LOC105901553 other upstream 13164 24665385 ~ 24669297 (-)
LOC120543531 pde6h,LOC101074909,LOC104944980,LOC103354149,LOC107382209,LOC103383788,LOC101158417,LOC106533555 other upstream 103711 24755932 ~ 24759618 (-)
G7589 NA other upstream 1046040 25698261 ~ 25699557 (-)
G7603 LOC103353181 other upstream 1131723 25783944 ~ 25788229 (-)
G7722 LOC103354873 other upstream 1349303 26001524 ~ 26009217 (-)

Expression


Co-expression Network