G8023 (lcorl)


Basic Information

Item Value
gene id G8023
gene name lcorl
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 26861187 ~ 26865281 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU10905
AACGCttaaaccaaaatgttttttttaaacagcactTCCAACAAACAAATGTTATTGTTCAAATCAACGAACAGTCATGTGAGTGATTTATTTCACTATTAAAACAGGTAATTGATTTTAATATCATTACATTTGTTTAAGTGTTTTGATAATGGATAGTATTTCCAGCCCTTGTCAGGGTTCAACTGGACTCAATGCAGTATAAGTGTTACATTCTGTAGCGTTGTGTGTAGTGTGTCGAGTTTGTTTAAAccaaatttttgttttaatcacTTAAATAATTTCATCTTAACGTAAGCACTAAACAACCACAATAGTCAAGGGTGTCATTGTAGGAATAAATCAATTATATGGGCTAACATTTAAAAGCATTCATGCAGCAATACACATTTCACATTGCATCAAAGTGCTCGATTACAAATTAAGAACTACAACCACCAAACTAGTAAAATTCTGAAGCATTATCAATAAATAAGTATGCAGCAACAACAAACTGTTTCTACAATTAAAAAAGCTTCTTATAAATTATAGTGCAATAATTAATTTATGCATAAATAGCAGATTTCTGTTAAGTCATTTCAAAGATTTGCCAGCAGTTCACAAACAAAGGCCTTAAGCTTGAAGTATTCTAGAATATACTGCAATTCAACTTATGCAATGAAATAATTTTTCTATTTCTCAAGAGGTGTTTAGGCATGTTTACAAACTGGTTCTTTGATATAAATAGCAGATAATTCCCAGAGTAGAGACATCATGCTGCACTATGCTGTGGCCCCAGACACAGGCACTGTGTACTGATAAGAGTGGAGACATTCAGGAGCGGAGACATCCGTAAATTTGTATAATTTCCAAAGTTACGAAGGTTAAAATGCCGAACAATCTGACCAAACAAGGCTTtaaattttctttttacaattagCCTTAAAATTACAAATAACAGAGAAAAATAACCAACAAGGACAAATACTTACACCAAGAATCTCTTCTGGTGCAAGCTAAGAACATGGCAGATATTCTGAAAAGAAATCTTTCACAACTCAACGGCTAACTGACTGTATAATAACTTACTAAAATAAGTTTAAGTGTTGTTGATGGCAATACATTTACACCTATGTGTTCCTTGAGAGACAAACAGCTCACAAGTGTTCATTAGCTAATACCCCAGCAGATTCAGTATCATAACAGAGGCCTTGATGTGAAACCCAACACTATAGGCAGATAAAGTTCAGAGGTATATGTGGCAACAAGgttggtgagagagagactggcTGACATCACAGCAAAACAAATTGAAGCAGCTTTGTGTGGGTAACCCTGAACTGCTGCTTTGGTAGTAGCACAGTTAATGGAAATAGGCCCATCTCAGAGGCAGACACAACATTTAGCATTTCCccagacacaaacaaagaagCCTGTAAGCCTTGCACTGAATCAAGTCAAACCAAAAACTACTGTAACATCCAGTAGCCTACACAATCAACCATCAATAACATTTAACCCCATCCATGCACTAAATCCTAACCTGTCATGTAGGCTTCAGACATTACAATTCATGTCATCTTGGACTTAGTTGAAATAGGCTTCTTTGTTGTAGCTACGCCTCTTTGTGCCAGGGAAAAGTAAAGATTTAAGCAGCAGTCATGTATGAGGTTTACAGTAATACAGCTACAGTAGCAGAATTAGTAAATATCTGTGATAATAAAAGAACACATTTTACAAACAGTACACATACGAAATAACGTTTCCTAAGCTTATCAGTGCACACTTTAAAACATGCTGCAGAGATGCATTCCAACTACACTCAATACAATGTTCAGACTAGCTTGCACAAATAGAGAGGAGAACTATGTGGACACAAAATCGCTTTCTTAAGCTAATCTCTTCAACAAAAACTCATAGTAAAGATGTAGCCACCACAGCAGTTTATACTGTACAATCTCCCTGTTTGTAGAGGTGTCTAAATAGCAATGAGTTTTAAATCCGTTAAAATGGCTCTAAGTCACTTCAGTAGCCTAGGTAAAATAcccagagagagatagaaaactGCAAATGACAATCATCAACGTTCCTTTAAGAAGGAGCTTTATGAACTGAATCAAACCTGAATAACCTAACAGCTAGCAAACATGAGAGTCACACTTTATGTCTTAGTTTTAAGAGGTCTCATACTTAATCCTGGGCATCTAGTGGGTACCAATCAAAGTCAGGTTTTCTCTTTGAAGAAACCAAAATCATATAGACATGAAAACAAAGTTAAGAACTTCCTGAAGGTTATTTTTGTATCTGGTTATTACCAACAAATCCCCTTaagagaccaaaaccaacaactgATTTATCCTTACAAGTATGTTCGTTGTAGCCACAGATTGATAGAGCGTATACCTCTGTGCCATAGAACTCCATTGTCATCCAAAGATAACTGTATGTACAATCTATTGCACATGTGCAAAGCAGAGGCAAAAGAATActttcaatttaaaaagtagTGGACAAAAAGCAGTTTAAGTCATACCTGATAAAAGtttaagacaaaaacaacactttgttAAGACATTTTGTGCAGATAATGTGCACATCTGTAActtggggaagaaaaaaaaaaaaacaggttaaaaaaCACATGGCCCCTGAGAATTTcaatatatcaggctttggccACACAGACAATACATGTTAGTAGGATAAAATGTTATTGTTTTAGTCTTTCTGTGGGATTTGTTGAAAACCCTAAACAGACAATATGCCACAAGACATTTCCTTTAAGATCTTTTAGGTTTAGTGATAACAAATTAAGCTATGAGGTGTTTGTTGAGTTTCGCAGTTTTGCCACTGTGAACAAAAGCTGCAATGAGCACCACTGCCTCCTGAAAAAATGCTGTACCCTTTAGCTGCTTTAAGGAAGCCCAGGAATAAGCTCGAGAAATACAGATAAAAGTATGACTATCACATTACAGACCTGAATATCAATATCCATACATTTTGTAAAGGcatgtgttgtgtttaaacaAGTGTCTCCAGAAAACATGTATCTTGTCAGAGGTGATGAGTTCAAGTTTTGAGGAGTTCTAGAGGCGTTTTGTTGTCTAGAACATCTTTGCGTCAGCAGCTGAGGCAAGAGTCCCTGAGTTAGTGGAACCGGTCATGGTACCAGAACAAGACGAGTTGGAATTGGATGAACAAAAGTTGGCAGATTTCTTCTTGGGTGGGTTCTTCAGTGTTCCAGTACGCTCTTTGACTTTGTATTCCAGTGTGCTGTGGGGCACCCCATAAATCCCCTGGGCCTTGGACACACTCATGCGCCCTGCCATCACCATAGTGATGGCCTCCTCCAACAGGTCGTGGTCATACTGGCGGTATCGCCCACGTTTCTTTCTTGGTTGCTTGTCTTTATCCCGGCCACCGTCTTCTGAATCATCCAGTGAGGAACTGCGTGGTCCCAGGCGATGAGGTGACTGGTTGGCACTGCCTGGACAGCCATGTTGTAAGAAAGGAGGTCTGAGTTTGAAGAGAGACGAAGGTCTCCCAGTAGCTGTCGATGAACTGGCGGCACCCTCCATTGATGAGGTACGTTGAAGTAGGTTTTCAGCCATGCTGCCATTCTCAGCTGGGATTGACCTGTTATGATCAGACATGGAACGGACCTGAGGAATACGCAGGGACGCGAGTGGCTCCAGACTGGACGTGGGGCTTGGTGGGGACTGGAGAGCATCCCTGAGCTGGAAAAAAGAGTGGGGGAGGGATTTCTGTAGACCACCCGGCTGATAAATGGTAGGAGAGCTTGAACTCAAGTCTCCATTCTCGTCTGCAGCTCCTCCAATTTCTGCCCTCTCTGCCCACGCCGCCACCTTCTGCAGAACAAGACGGGCTTCACCGCCCAACATCGATGACATCACATTGTATGACGTCACTTCATCCCTGATTCCTGGTGCAAGTTGATGCAGCATCTCCTGCCTTCCCTCAGCCCAGCCGTCCAGACCTTGTTGCAGGGTGTGAATGGGAATTCCATAAAGCAATGCGGcccgctgctgctgcagcctccCTG

Function

symbol description
lcorl Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human LCORL (ligand dependent nuclear receptor corepressor like).

NR:

description
PREDICTED: ligand-dependent nuclear receptor corepressor-like protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10905 True 4042 lncRNA 0.51 2 26861187 26865281

Neighbor

gene id symbol gene type direction distance location
slit2 slit2,LOC102781928 coding downstream 80939 26693345 ~ 26780248 (-)
pds5a pds5a,LOC102784517 coding downstream 241163 26586509 ~ 26620024 (-)
map9 NA coding downstream 294749 26560386 ~ 26566438 (-)
ugdh ugdh coding downstream 301460 26554034 ~ 26559727 (-)
rpl9 rpl9 coding downstream 314631 26539304 ~ 26546556 (-)
ncapg ncapg coding upstream 9432 26874713 ~ 26889605 (-)
haspin NA coding upstream 51101 26916382 ~ 26931485 (-)
LOC120563023 LOC104951640 coding upstream 130880 26996161 ~ 27012421 (-)
si:ch211-113e8.11 NA coding upstream 199694 27064975 ~ 27066480 (-)
ankrd49 ankrd49,LOC102800147 coding upstream 250759 27116040 ~ 27128186 (-)
G7971 NA non-coding downstream 73263 26739826 ~ 26787924 (-)
G7969 LOC102305077,LOC101481585,LOC102783671 non-coding downstream 171057 26682971 ~ 26690130 (-)
G7948 NA non-coding downstream 223347 26629781 ~ 26637840 (-)
G7936 lias non-coding downstream 309281 26550712 ~ 26551906 (-)
G7921 NA non-coding downstream 365422 26492902 ~ 26495765 (-)
G8024 NA non-coding upstream 2144 26867425 ~ 26873605 (-)
G8027 NA non-coding upstream 31136 26896417 ~ 26914727 (-)
LOC120563938 NA non-coding upstream 59885 26925166 ~ 26925792 (-)
G8037 NA non-coding upstream 95142 26960423 ~ 26960916 (-)
G8081 NA non-coding upstream 226188 27091469 ~ 27091754 (-)
smim14 smim14 other downstream 282372 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 325451 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 739538 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 766943 26075397 ~ 26094244 (-)
G7722 LOC103354873 other downstream 851970 26001524 ~ 26009217 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other upstream 416517 27281798 ~ 27294911 (-)
rnf24 rnf24,LOC102778784 other upstream 2440740 29306021 ~ 29339847 (-)
G8701 NA other upstream 2724027 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 3710591 30575872 ~ 30744878 (-)
G8975 NA other upstream 4106107 30971388 ~ 30974612 (-)

Expression


Co-expression Network