LOC120562398


Basic Information

Item Value
gene id LOC120562398
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 28809425 ~ 28812219 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU11354
CAACAGCGCGACAGTGATATGAAGAAGGACAAATGCCAATGGACAGACAAAGAAGGTGACATCTTTTTAAAACAATGTGTTAAATTAGCAGCTGAACTTTAACCTTTTTAGTCTTTTGCCCTATGTGGAGTTGGGCGTGGTCTGCAATCAGCTGCAGTGGAGAGAGGTGTGGGGATAGAGCAGGGAGCACTGCCAGTAACTGTATATAAGAAAAGCTCCACATTCAGAGCAACACTACAACAACCTCCTCGACCGTCTGCGAGACAATCTGCTGAAGTTGTGAAGACTTGAAGGTGTGATCACTGTAACCATGCTGAAGGTAGTATTTGTGCTTGGATGCCTCCTGAGCTTCGCTCTGGCTCATCCTACGGACATGGAGCACAAACGACTTGCTCGGTCAAGGTCCGGCTCACATTCCAATGAGCGTATATACCGGCCACCTATGGTGAATTTCCCGTTTGCGCCGCCGGCGTGGCCACCTATGGTGAATATCCCGTCTGCAACGACTATCCCACCGTGGGTCCAGTCCTTACTTGCCCTCATCCAACAAACTACAGCACCTAAGTAAAATCTGGAATATAACCGGAGATCAATAAGTGAATGAAAACCTGTATTGGACGGCATAGAATTTTGACaactgtttctttctcttttcaaaTTTAAATGATGATGTCTTATAGTAAGTTCAATTAAACATTTGGATCAAAATCACTTTATTCTCTGTAGTAGCTGACAATAAACTTCATAAATGAAAAACA
>TU11356
GTtaagtttttttgttaaaacgTTGAGCAATGGGCTGTGCGCCTATCAGTAGCTGGGCAGTCGGAGGTGCACGGTTGGTAGTTGTGAAGTTGTGTTCATAAGTTTgagcagtaaaaaaataaacagtttgCCTGTAAATTGTCCGCCTGCTGTGTTCTGTGCTGAGGGTAACCCACGGTGGCAGCGAATCTTGCTACACCCTATAAACGATAATGCCTATCTCACCTATAAACAGctggttttgattttttttgcttCCCAGTATTGTGTTCCTCTTACCCTTAACTGTATATAAGAAAAGCTCCACATTCAGAGCAACACTACAACAACCTCCTCGACCGTCTGCGAGACAATCTGCTGAAGTTGTGAAGACTTGAAGGTGTGATCACTGTAACCATGCTGAAGGTAGTATTTGTGCTTGGATGCCTCCTGAGCTTCGCTCTGGCTCATCCTACGGACATGGAGCACAAACGACTTGCTCGGTCAAGGTCCGGCTCACATTCCAATGAGCGTATATACCGGCCACCTATGGTGAATTTCCCGTTTGCGCCGCCGGCGTGGCCACCTATGGTGAATATCCCGTCTGCAACGACTATCCCACCGTGGGTCCAGTCCTTACTTGCCCTCATCCAACAAACTACAGCACCTAAGTAAAATCTGGAATATAACCGGAGATCAATAAGTGAATGAAAACCTGTATTGGACGGCATAGAATTTTGACaactgtttctttctcttttcaaaTTTAAATGATGATGTCTTATAGTAAGTTCAATTAAACATTTGGATCAAAATCACTTTATTCTCTGTAGTAGCTGACAATAAACTTCATAAATGAAAAACA
>XR_005639772.1
GTGGAGTTGGGCGTGGTCTGCAATCAGCTGCAGTGGAGAGAGGTGTGGGGATAGAGCAGGGAGCACTGCCAGTAACTGTATATAAGAAAAGCTCCACATTCAGAGCAACACTACAACAACCTCCTCGACCGTCTGCGAGACAATCTGCTGAAGTTGTGAAGACTTGAAGGTGTGATCACTGTAACCATGCTGAAGGTAGTATTTGTGCTTGGATGCCTCCTGAGCTTCGCTCTGGCTCATCCTACGGACATGGAGCACAAACGACTTGCTCGGTCAAGGTCCGGCTCACATTCCAATGAGCGTATATACCGGCCACCTATGGTGAATTTCCCGTTTGCGCCGCCGGCGTGGCCACCTATGGTGAATATCCCGTCTGCAACGACTATCCCACCGTGGGTCCAGTCCTTACTTGCCCTCATCCAACAAACTACAGCACCTAAGTAAAATCTGGAATATAACCGGAGATCAATAAGTGAATGAAAACCTGTATTGGACGGCATAGAATTTTGACaactgtttctttctcttttcaaaTTTAAATGATGATGTCTTATAGTAAGTTCAATTAAACATTTGGATCAAAATCACTTTATTCTCTGTAGTAGCTGACAATAAACTTCATAAATGAAAAACATGGA
>XR_005639773.1
agtttgCCTGTAAATTGTCCGCCTGCTGTGTTCTGTGCTGAGGGTAACCCACGGTGGCAGCGAATCTTGCTACACCCTATAAACGATAATGCCTATCTCACCTATAAACAGctggttttgattttttttgcttCCCAGTATTGTGTTCCTCTTACCCTTAACTGTATATAAGAAAAGCTCCACATTCAGAGCAACACTACAACAACCTCCTCGACCGTCTGCGAGACAATCTGCTGAAGTTGTGAAGACTTGAAGGTGTGATCACTGTAACCATGCTGAAGGTAGTATTTGTGCTTGGATGCCTCCTGAGCTTCGCTCTGGCTCATCCTACGGACATGGAGCACAAACGACTTGCTCGGTCAAGGTCCGGCTCACATTCCAATGAGCGTATATACCGGCCACCTATGGTGAATTTCCCGTTTGCGCCGCCGGCGTGGCCACCTATGGTGAATATCCCGTCTGCAACGACTATCCCACCGTGGGTCCAGTCCTTACTTGCCCTCATCCAACAAACTACAGCACCTAAGTAAAATCTGGAATATAACCGGAGATCAATAAGTGAATGAAAACCTGTATTGGACGGCATAGAATTTTGACaactgtttctttctcttttcaaaTTTAAATGATGATGTCTTATAGTAAGTTCAATTAAACATTTGGATCAAAATCACTTTATTCTCTGTAGTAGCTGACAATAAACTTCATAAATGAAAAACATGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11354 False 758 lncRNA 0.46 5 28809429 28812219
TU11356 True 844 lncRNA 0.44 5 28809429 28811912
XR_005639772.1 False 638 lncRNA 0.45 5 28809425 28812095
XR_005639773.1 False 724 lncRNA 0.44 5 28809425 28811788

Neighbor

gene id symbol gene type direction distance location
LOC120562360 NA coding downstream 17103 28790069 ~ 28792322 (-)
scpp7 LOC103369818 coding downstream 20352 28786602 ~ 28789073 (-)
scpp5 NA coding downstream 23578 28783601 ~ 28785847 (-)
enam LOC103369798 coding downstream 33475 28772912 ~ 28775950 (-)
cnga1a LOC103369883,LOC107099492 coding downstream 37399 28766688 ~ 28772026 (-)
zgc:111983 NA coding upstream 404 28812623 ~ 28813564 (-)
odam NA coding upstream 4664 28816883 ~ 28819501 (-)
scpp9 NA coding upstream 10938 28823157 ~ 28825677 (-)
sparcl1 sparcl1 coding upstream 16107 28828326 ~ 28835621 (-)
aptx aptx coding upstream 30328 28842547 ~ 28845199 (-)
G8385 NA non-coding downstream 1977 28806945 ~ 28807448 (-)
LOC120562378 NA non-coding downstream 4604 28803978 ~ 28804821 (-)
G8371 NA non-coding downstream 9556 28743751 ~ 28799869 (-)
LOC120562373 NA non-coding downstream 13288 28795582 ~ 28796137 (-)
G8335 NA non-coding downstream 158441 28650663 ~ 28650984 (-)
G8417 NA non-coding upstream 8085 28820304 ~ 28859071 (-)
G8438 NA non-coding upstream 103348 28915567 ~ 28915819 (-)
G8486 NA non-coding upstream 200206 29012425 ~ 29016986 (-)
LOC120562689 NA non-coding upstream 285690 29097909 ~ 29102324 (-)
G8572 NA non-coding upstream 408993 29221212 ~ 29221640 (-)
lonrf1l lonrf1,LOC103360493,LOC102797331 other downstream 1514514 27281798 ~ 27294911 (-)
smim14 smim14 other downstream 2230610 26567067 ~ 26578815 (-)
LOC120566984 NA other downstream 2273689 26533833 ~ 26535736 (-)
adamtsl7 NA other downstream 2687776 26112014 ~ 26121649 (-)
polq LOC104947247,LOC104947243,LOC106593755 other downstream 2715181 26075397 ~ 26094244 (-)
rnf24 rnf24,LOC102778784 other upstream 493802 29306021 ~ 29339847 (-)
G8701 NA other upstream 777089 29589308 ~ 29593623 (-)
bnc2 bnc2 other upstream 1763653 30575872 ~ 30744878 (-)
G8975 NA other upstream 2159169 30971388 ~ 30974612 (-)
znf827 znf827,LOC102789810 other upstream 3122418 31934637 ~ 32006542 (-)

Expression


Co-expression Network