Gene
RNA
| Item | Value |
|---|---|
| gene id | G9179 |
| gene name | smarca5,LOC104965364 |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053112.1 |
| NCBI id | CM020909.1 |
| chromosome length | 48724115 |
| location | 31699716 ~ 31700300 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| smarca5 | Predicted to enable ATPase, acting on DNA and DNA binding activity. Acts upstream of or within cardiac ventricle development and retina development in camera-type eye. Predicted to be active in nucleus. Orthologous to human SMARCA5 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5). |
| description |
|---|
| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU12389 | True | 375 | lncRNA | 0.41 | 3 | 31699716 | 31700300 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| usp38 | usp38 | coding | downstream | 8652 | 31682961 ~ 31691064 (-) |
| gab1 | gab1 | coding | downstream | 20955 | 31623918 ~ 31678761 (-) |
| inpp4b | inpp4b | coding | downstream | 77042 | 31337222 ~ 31622674 (-) |
| rnf150a | rnf150 | coding | downstream | 380729 | 31303089 ~ 31318987 (-) |
| LOC120559886 | LOC103373026 | coding | downstream | 398036 | 31291547 ~ 31301680 (-) |
| frem3 | frem3 | coding | upstream | 1455 | 31701755 ~ 31732087 (-) |
| si:dkey-27h10.2 | NA | coding | upstream | 39171 | 31739471 ~ 31766897 (-) |
| prmt9 | prmt9 | coding | upstream | 577556 | 32277856 ~ 32296565 (-) |
| nr3c2 | nr3c2 | coding | upstream | 694961 | 32395261 ~ 32480387 (-) |
| sh3d19 | NA | coding | upstream | 1093309 | 32793609 ~ 32812276 (-) |
| G9123 | NA | non-coding | downstream | 346368 | 31352559 ~ 31353348 (-) |
| G9111 | znf330 | non-coding | downstream | 371407 | 31261992 ~ 31328309 (-) |
| G9110 | NA | non-coding | downstream | 440698 | 31258786 ~ 31259018 (-) |
| G9109 | NA | non-coding | downstream | 441169 | 31258331 ~ 31258547 (-) |
| G9108 | NA | non-coding | downstream | 441642 | 31257789 ~ 31258074 (-) |
| LOC120567382 | NA | non-coding | upstream | 383463 | 32083763 ~ 32132374 (-) |
| G9322 | dclk2 | non-coding | upstream | 872713 | 32573013 ~ 32573946 (-) |
| G9370 | rps3a,rs3a,LOC107695588 | non-coding | upstream | 1072904 | 32773204 ~ 32792497 (-) |
| G9392 | NA | non-coding | upstream | 1136721 | 32837021 ~ 32839250 (-) |
| G9395 | NA | non-coding | upstream | 1144372 | 32844672 ~ 32845053 (-) |
| G8975 | NA | other | downstream | 725104 | 30971388 ~ 30974612 (-) |
| bnc2 | bnc2 | other | downstream | 954838 | 30575872 ~ 30744878 (-) |
| G8701 | NA | other | downstream | 2106093 | 29589308 ~ 29593623 (-) |
| rnf24 | rnf24,LOC102778784 | other | downstream | 2359869 | 29306021 ~ 29339847 (-) |
| lonrf1l | lonrf1,LOC103360493,LOC102797331 | other | downstream | 4404805 | 27281798 ~ 27294911 (-) |
| znf827 | znf827,LOC102789810 | other | upstream | 234337 | 31934637 ~ 32006542 (-) |
| LOC120567365 | NA | other | upstream | 521657 | 32221957 ~ 32226423 (-) |
| lrba | NA | other | upstream | 884424 | 32584724 ~ 32781154 (-) |
| G9418 | fbxw7,LOC104948758 | other | upstream | 1392160 | 33092460 ~ 33134920 (-) |
| G9488 | NA | other | upstream | 1582778 | 33283078 ~ 33284080 (-) |
