G953


Basic Information

Item Value
gene id G953
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 2980433 ~ 2982716 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU1298
atggctcagtagagctgtgactctctgtcagcctggctacagtgctgaaaagaaaccttgggttgttcttgttttcttctattaatgatgagtaaaTAGTCTGATCTAGtatttctgagggccttcctataggttttcagactgtcttgccaatccaaacgagattcttccagtttggtggaacgccatttactttcaagttttcgcgagATTTGCTTTAATTTACGAGTTTGGGAGCTATACCAAGGTgcaagtttcctttgcttcatcgtcttctttttgaggggagcaacagagtctaaagtagtcCGTAGGCAGGCCATAACACCATTTACACAAttgtcaatttgagagggactaaagtttacataaaggtcctctgttgtaTTAAAGCATGGTAATGAGTTTAGTGCTGTTGGAATACCTTCCTTAAAtgtagctatagcactgtcagataggcatctagtgtagaagcttttatctaatttcgtataatcgggtattaagaattcgaaagttattaagaagtggtctgataataaaggattttgcgggaatactaatacatcttcaattttgatgccatatgccaacacaaggtcgagggtgtggttaaaacagtgcgtggcctcatgaacactctgactgaaaccaattgaatctagtagtgagttgaaagcagtactaaggctatcgttgtcaacgtccacatggatattaaaatcacctacaataagtaatTTGTCTGATTTTAGGACTACAGatgataaaaactcagagacttccgataaaaattcagaatatggacctggtgctcggtagacaacaacaaatataattggctgtactgatttccatgttggatgttgaagattaagaacaaggctttcaaaagagttataatttagtttaggtttaggattaattaacaggcttgaatcaaagatggctgcaactccccctcctcggccggagcctctaggaatttgagtattaatatgactgggaggagtggcttcatttagactaacatattcttcatggcccagccaggtttcagtaagacagaatagataaATTTGATTATCGGATATCAATttgtttactagtactgctttagaagatagagatctgatatttaatagtccacatctaattttcctattctgttctatcattgcagtggtagttttaattccaattaggttgttaagtattgcacCTCTCTTGGTTACCTTTGATCTAACTGATCTGAGTCGAGGAACAGACACCAtctcattttttgggacaggctgtggctgacgTGAACTGGATGCTAAATTGACTATGTTTGCAGTCAACTTCTTATTACTTATGGGATTCGCCACTTTGTATGGTCTATTGTTGATTATAACTGGAATACTACTAGTCGTACATGTTActctgcagaaaacattttcagattcatccacttgtatagtgctatcaggatcaatacctggggggcatgaatctgtgatattttcaacagaaTGTCAATATTACAAACTACAAACTACAAtgatgtagagacaacagtagagagtagtatgtagagagacaacagtagagagtagtatgtagagacaacagtagagagtagtatggagagacaacagtagagagtagtatgtagagagacagaagtagagagtagtatatagagagacagcagtagagagtaatatgtagagagacaacagtagagagtagtatgtagagacataacagtagagagtagtatgtagagagacaacagtagagagtttcctaaacctaactgtcccgttcttgtgctgcATATCAGTTAAACATACGCAGGACCCAGAGAGTCTAAATGTGACGCTAAGGGAGACTTTTTGTGTCAacaacaaacgccaaaggcacctgaccaagcattgctttttgacgcgatgggagtgagaatgtgttgaaacCCTTTTAAACTATCAAATCCTCGGATGCCTTTTCTACCAACTCTCCTTGTGATGCCCCTCCTAAACCCTCTGATATCCCCTCATACCCCTCTTATATCccatctaaccctaaccccatcACACCTCTCTTATATCccatctaaccctaaccccatcACACCCCTCTCAGGGTACCCGCGGgtctaaaaagtattaaaaaagtcTTAGGTTTAGTATTCTAAAAATAAGGCCTTGAAAGTGTTACATTACAGAACAAAGGTCTTAAATATTTCTTGTCCTTTCATAGGATTAAATAAATGACGTAACATCATAAAGAAATGTCTTGTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1298 True 2284 lncRNA 0.47 1 2980433 2982716

Neighbor

gene id symbol gene type direction distance location
tmem178 tmem178a,LOC102307988 coding upstream 3004 2938097 ~ 2977429 (+)
eif4a3 eif4a3 coding upstream 89428 2882923 ~ 2891005 (+)
LOC120561808 srf,LOC103372093 coding upstream 99313 2858504 ~ 2881120 (+)
LOC120566159 NA coding upstream 396171 2572980 ~ 2584262 (+)
LOC120561353 LOC102083160 coding upstream 586146 2362732 ~ 2394287 (+)
LOC120557776 NA coding downstream 126875 3109591 ~ 3128050 (+)
LOC120557788 LOC100703858,LOC102778772,LOC103375691,LOC101465362,LOC107082671 coding downstream 174487 3157203 ~ 3159292 (+)
LOC120550686 LOC106676715 coding downstream 382100 3364816 ~ 3373141 (+)
rrbp1b NA coding downstream 430709 3413425 ~ 3448493 (+)
LOC120555395 NA coding downstream 505627 3488343 ~ 3490010 (+)
G956 NA non-coding upstream 39461 2940691 ~ 2940972 (+)
G954 NA non-coding upstream 40638 2939355 ~ 2939795 (+)
G939 NA non-coding upstream 69475 2897397 ~ 2910958 (+)
G941 NA non-coding upstream 69730 2904336 ~ 2910703 (+)
G936 NA non-coding upstream 103326 2875574 ~ 2877107 (+)
G960 NA non-coding downstream 543 2983259 ~ 2991670 (+)
G968 NA non-coding downstream 6237 2988953 ~ 2989599 (+)
G969 NA non-coding downstream 9501 2992217 ~ 2992572 (+)
G973 NA non-coding downstream 62217 3044933 ~ 3045543 (+)
G959 NA non-coding downstream 99515 3082231 ~ 3083136 (+)
G879 NA other upstream 279458 2626243 ~ 2700975 (+)
LOC120566146 LOC107082675,LOC108251143,LOC103383281 other upstream 409979 2558876 ~ 2570454 (+)
G714 LOC103375176,LOC105920176,LOC100706186,LOC101468385 other upstream 634385 2307285 ~ 2346048 (+)
LOC120566000 NA other upstream 1013178 1946145 ~ 1967255 (+)
LOC120566853 snrpb2,LOC102212107,LOC102301910,LOC101474810 other upstream 1143973 1746571 ~ 1836460 (+)
LOC120567073 sos1 other downstream 12313 2995029 ~ 3080190 (+)
LOC120567079 NA other downstream 85682 3068398 ~ 3071473 (+)
LOC120557752 LOC104935435,LOC108250455,LOC106524354,LOC101471560,LOC103371946,LOC102291612 other downstream 145373 3128089 ~ 3157138 (+)
dzank1 NA other downstream 192885 3175601 ~ 3259758 (+)
LOC120555387 LOC106675676,LOC106675675 other downstream 485408 3468124 ~ 3480130 (+)

Expression


Co-expression Network