G9836 (arfip1)


Basic Information

Item Value
gene id G9836
gene name arfip1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 34680541 ~ 34685004 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU13256
ATGCCATAAGCTTTTCTTGCCCCCTCAGTGACGATGTCTGTTATCTGTCTTGCTGTAGCCCTCTGTTAGCCAAATGTACTACTGTATAAGGCTTTGCCTCGCTTCCTATTTCTTTGTTGGCCCCTGGTGGTGACTTCTCATACAAGCTGCTACTAcaaacacAACATTTGTTAATGTTTCATTATTACAAAAAGGTAGAGCTCCACTAGCACATCATTCTGTAGGTCTTCAggaaaactaaactaaatcaaAGCCAAATGGCAGCATTGATCATAAACTACATATTCAAAGGCAAAATAGAGAAaattacaaatatatatatccatCTATTTCAGGGAAACATTAGATTGTTGTACAAGATTCACACTCTTAAACTGCTATGGCGAGCCATAGGGAAAGTACAAATTGAGGACAGCTGGTTATCAATACCGGGGTACAATATGTcctctttaaaaaatatacttttatgcAGCCCAATGATAGAAACCGTTAGCAGCTCAGACAAAGGATGCTGGTCTTTCAAATTTACAAAAGGTTTCTCAAGTTAATCGTATTTTGGTTGTCACCTTACATATCGTACAGCACTTACAAGTTCTTATGTAATTAGTCCCAAATGCGTAAATGTGAACATGTGCAATATGGATAAATATCTTTGAGAACAGCaagttttaaaatatatttactttCTGAATGTTACTGGAGTATTCTGTAACATAGCCATCATGTTTGTGTTGCGTGGAGTGTGTTAACATTTACAGTTGTACAGGTTTTAACTGTACTCCAAGAGtgtgtgcatgggtgtgtgGTCCATTCTCTTCCTTCAAGAGTTGGTcccgaaaaaaagaaaaaaaaaaaactggtagtGAGAGCGTCGGTTTTCAACAGCAAGACCAGATATCAAAGCACGGAGGGGAAGAGAAGAACTAATTCAAGAATTCAAGGCACATTTAGTCACATAAGGCTGGTCCAACATTTTCTCTGGAATCTAAGAGAATCAACATTTTTACCCATTCAGTCAAATGCCATGAATGTAAAGAAAACAggaatgctaaaaaaaatccaaaggGTGATATTGATTACAAGTAGCATTGTGTCAACATAACAACATACCAACATACAGGATTTGTTGTGAACGGCGATCAGTATGATTTTAACGGATCAATTTAagggaatagtttgacattttgggaaatactctaatttgttttcttgctgagagttagatgagaagattaaaTGTTAAGCTACAGCctgcagctggttagcttagcataaagactggcaTCAGAGTGAAATACtgagcctggctctgtccgaaGATTAGATTAAACCACAATTTGATTTTttactttggtttttgtattAGTGAggtttagaggtgctggtaggcagaacgttttttacctttggacagagcccgGCTAGCTGTCCCCCCCGTCCCGTTTCTAGtcattatgctaagctaaactaaccggctgctggctgtagccttaAATTAAAGAAACTCTCAgtaaaaaagcaaataagcgcatttcctaaaatgccaaaactaCCACTTTAATCAGAGTTTGCTGGTTAAAATGACcagtttgcatttgcatgattCATGAATCTGAATGATGCTTTGCCCCGTTTATCACAACCGGTTTAAGATCAAATCATGAGAGAATTCGTATTCAGTCTCCTGAAGCTTCCCGATTGGTCTTTCAAAAAGCATTCATCCACATCTCAGTCAGCTGATAAGAGTAATGTCAATAATGGGTAAGACGGCAGTGTTTTGGATCCCGTAGCTGCCCTTACAGAGCCAACATGTCCGCCGTGCTGGGATACAACATTCATACGCTGGAATACAAAAAGCCATTTACAGTTTTCCAAATGTGTTTACTGCAGCAACTCCCGTTCAACAGATTTGTCAAACAGTATAAAAGTGCGTCTCCCATGATTTCAAATAACTGCAAGATGAAAAGTATGATTTAACAAGTGTCAAACAGATTATGGGAGGATTTTTTGTCCTCCTTTTTGTATTGAGTTGAAAGATTTACAGTTCTGAAAGTTTGAAAAGGCTGTGACAGTAGAGttgaagggagggggggggtcctGTAGTTTCTGTAGAATTTGACATTTCCTGTCAAACTCAGCCGCTGTGGCTTTCGAAAGTAGTGATTAGTGCTCTTCCAGCCAAGATGGACTGTCCCCACCTGGCATTTTCAACTTGATGTGGAACTGCTTGAGTGTCTGTTCCAGCTGCTGTTGGTTTCCAGCGTAGTACGCAGCTATGGCGTTGTGGAACAGGATGAGCTGGTTATGCAATACCTTCACCTGGGTTTGGGGAGCTGGCAAATTCATACTGTTTGATATTAACCATGGTGTCTTCGATTGTTTTGTCCACGAGTGTGTTCACACTGCAGATGAAAAAGTTGATGGCACCCAGCAGTGTCTCTCCATTTTTGGACAAAAGCTTTTGGGTGTCAGCGTTGTAACCAAACTCCTCCTAAAGAAAAGAGTCAAA
>TU13257
ATGCCATAAGCTTTTCTTGCCCCCTCAGTGACGATGTCTGTTATCTGTCTTGCTGTAGCCCTCTGTTAGCCAAATGTACTACTGTATAAGGCTTTGCCTCGCTTCCTATTTCTTTGTTGGCCCCTGGTGGTGACTTCTCATACAAGCTGCTACTAcaaacacAACATTTGTTAATGTTTCATTATTACAAAAAGGTAGAGCTCCACTAGCACATCATTCTGTAGGTCTTCAggaaaactaaactaaatcaaAGCCAAATGGCAGCATTGATCATAAACTACATATTCAAAGGCAAAATAGAGAAaattacaaatatatatatccatCTATTTCAGGGAAACATTAGATTGTTGTACAAGATTCACACTCTTAAACTGCTATGGCGAGCCATAGGGAAAGTACAAATTGAGGACAGCTGGTTATCAATACCGGGGTACAATATGTcctctttaaaaaatatacttttatgcAGCCCAATGATAGAAACCGTTAGCAGCTCAGACAAAGGATGCTGGTCTTTCAAATTTACAAAAGGTTTCTCAAGTTAATCGTATTTTGGTTGTCACCTTACATATCGTACAGCACTTACAAGTTCTTATGTAATTAGTCCCAAATGCGTAAATGTGAACATGTGCAATATGGATAAATATCTTTGAGAACAGCaagttttaaaatatatttactttCTGAATGTTACTGGAGTATTCTGTAACATAGCCATCATGTTTGTGTTGCGTGGAGTGTGTTAACATTTACAGTTGTACAGGTTTTAACTGTACTCCAAGAGtgtgtgcatgggtgtgtgGTCCATTCTCTTCCTTCAAGAGTTGGTcccgaaaaaaagaaaaaaaaaaaactggtagtGAGAGCGTCGGTTTTCAACAGCAAGACCAGATATCAAAGCACGGAGGGGAAGAGAAGAACTAATTCAAGAATTCAAGGCACATTTAGTCACATAAGGCTGGTCCAACATTTTCTCTGGAATCTAAGAGAATCAACATTTTTACCCATTCAGTCAAATGCCATGAATGTAAAGAAAACAggaatgctaaaaaaaatccaaaggGTGATATTGATTACAAGTAGCATTGTGTCAACATAACAACATACCAACATACAGGATTTGTTGTGAACGGCGATCAGTATGATTTTAACGGATCAATTTAagggaatagtttgacattttgggaaatactctaatttgttttcttgctgagagttagatgagaagattaaaTGTTAAGCTACAGCctgcagctggttagcttagcataaagactggcaTCAGAGTGAAATACtgagcctggctctgtccgaaGATTAGATTAAACCACAATTTGATTTTttactttggtttttgtattAGTGAggtttagaggtgctggtaggcagaacgttttttacctttggacagagcccgGCTAGCTGTCCCCCCCGTCCCGTTTCTAGtcattatgctaagctaaactaaccggctgctggctgtagccttaAATTAAAGAAACTCTCAgtaaaaaagcaaataagcgcatttcctaaaatgccaaaactaCCACTTTAATCAGAGTTTGCTGGTTAAAATGACcagtttgcatttgcatgattCATGAATCTGAATGATGCTTTGCCCCGTTTATCACAACCGGTTTAAGATCAAATCATGAGAGAATTCGTATTCAGTCTCCTGAAGCTTCCCGATTGGTCTTTCAAAAAGCATTCATCCACATCTCAGTCAGCTGATAAGAGTAATGTCAATAATGGGTAAGACGGCAGTGTTTTGGATCCCGTAGCTGCCCTTACAGAGCCAACATGTCCGCCGTGCTGGGATACAACATTCATACGCTGGAATACAAAAAGCCATTTACAGTTTTCCAAATGTGTTTACTGCAGCAACTCCCGTTCAACAGATTTGTCAAACAGTATAAAAGTGCGTCTCCCATGATTTCAAATAACTGCAAGATGAAAAGTATGATTTAACAAGTGTCAAACAGATTATGGGAGGATTTTTTGTCCTCCTTTTTGTATTGAGTTGAAAGATTTACAGTTCTGAAAGTTTGAAAAGGCTGTGACAGTAGAGttgaagggagggggggggtcctGTAGTTTCTGTAGAATTTGACATTTCCTGTCAAACTCAGCCGCTGTGGCTTTCGAAAGTAGTGATTAGTGCTCTTCCAGCCAAGATGGACTGTCCCCACCTGGCATTTTCAACTTGATGTGGAACTGCTTGAGTGTCTGTTCCAGCTGCTGTTGGTTTCCAGCGTAGTACGCAGCTATGGCGTTGTGGAACAGGATGAGCTGGTTATGCAATACCTTCACCTTGTTCTCTTCCAGGAACTTCAGCTTGACGGAGACGTCGTTCCGCATCCTCTCGTACTTCTCGCGGTGGATCTGGAACTGCTGCTGGCAGTGCTCAATCTTGGGCATGGCGGCGGCGTCACGGGGCCCCAGATTCAACTCCTCCAAATCTGTACGGTACGCGTCATACTCAACCCTAGATGTGTGGTGTTATTTATCAGTATCACAAATATGCAATATGAGCGTAtaccagggctgtagtcaagtccacctttgtagagtccaagaccaggactagtcgagaccgggtcaagttcaagtccaatcaagaccgagtccaaaaaagtttgagtccaagtcaagtccgAGTCCAAATG

Function

symbol description
arfip1 Predicted to enable phospholipid binding activity. Predicted to be involved in intracellular protein transport and regulation of Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within regulation of protein secretion. Predicted to be located in Golgi membrane. Predicted to be active in trans-Golgi network membrane. Is expressed in notochord. Orthologous to human ARFIP1 (ADP ribosylation factor interacting protein 1).

NR:

description
PREDICTED: arfaptin-1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13256 False 2509 lncRNA 0.40 3 34680541 34685004
TU13257 True 2675 lncRNA 0.41 3 34682170 34685004

Neighbor

gene id symbol gene type direction distance location
fam193a fam193a coding downstream 16321 34641204 ~ 34664220 (-)
LOC120557822 LOC104965748 coding downstream 119666 34556973 ~ 34560875 (-)
LOC120561135 lrat,LOC103357487,LOC103156491,LOC107094918 coding downstream 151443 34527053 ~ 34529098 (-)
npy2r NA coding downstream 158784 34516787 ~ 34521757 (-)
tlr3 NA coding downstream 269180 34405052 ~ 34411361 (-)
slkb LOC103355271,LOC100692830,LOC107394353 coding upstream 256379 34941383 ~ 34974821 (-)
adra2c LOC104953545,LOC103354520,LOC103384182 coding upstream 531833 35216837 ~ 35220376 (-)
dok7b LOC103354519,LOC104946983,LOC107393269,LOC102790269 coding upstream 687013 35372017 ~ 35398518 (-)
htt htt coding upstream 771935 35456939 ~ 35492359 (-)
LOC120569607 NA coding upstream 792227 35477231 ~ 35477360 (-)
G9770 NA non-coding downstream 148537 34530343 ~ 34532004 (-)
G9747 NA non-coding downstream 202091 34474172 ~ 34478450 (-)
G9745 NA non-coding downstream 212358 34462958 ~ 34468183 (-)
G9732 NA non-coding downstream 315263 34365016 ~ 34365278 (-)
G9730 NA non-coding downstream 325215 34355008 ~ 34355326 (-)
G9838 NA non-coding upstream 20854 34705858 ~ 34706062 (-)
G9841 NA non-coding upstream 37976 34722980 ~ 34723718 (-)
G9842 NA non-coding upstream 38773 34723777 ~ 34726114 (-)
G9867 kiaa0922 non-coding upstream 139628 34824632 ~ 34825454 (-)
G9874 LOC104951083 non-coding upstream 162153 34847157 ~ 34847486 (-)
G9740 NA other downstream 222906 34452850 ~ 34457635 (-)
stox2a stox2,LOC100702551,LOC102293991,LOC101478850,LOC102775740 other downstream 1155026 33497102 ~ 33525515 (-)
tapt1b tapt1,LOC104934196,LOC102290950 other downstream 1316316 33306785 ~ 33364225 (-)
G9488 NA other downstream 1396461 33283078 ~ 33284080 (-)
G9418 fbxw7,LOC104948758 other downstream 1545621 33092460 ~ 33134920 (-)
G9997 NA other upstream 713636 35398640 ~ 35400474 (-)
rgs12b rgs12,LOC104946104 other upstream 719811 35404815 ~ 35451211 (-)
LOC120572869 NA other upstream 899466 35584470 ~ 35586613 (-)
micall1a LOC100693188 other upstream 1259044 35944048 ~ 35969266 (-)
slc5a10 slc5a10,LOC102791530,LOC103460715 other upstream 1548203 36233207 ~ 36256880 (-)

Expression


Co-expression Network