XLOC_004593


Basic Information

Item Value
gene id XLOC_004593
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 15111405 ~ 15115431 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010728
cacgttctcactcccaactcgtcacatactgacgcttggtcaggaaccctcggcgtcagttattgacgcacagggtacccctttagcgtcatatttagacgtgcagggattccctatagaatctgtgcctgagcctgaggcgtcatagggagatgctggaggctcgtataattaccaatagatgtcaacaaactttttaaaacctgatttacgcctattattacagttttcttattttaaaaatatgtaatttttattttgttcatgaaaagcgtctgtaaacggggtcgaaactactgtatgaataaacttcggcccacgtgacatcccttcacggtgagtttaacgccgctctgctattggtcaaactgcatcagcggtgagttctcagatgagttcaactgtcaacattaaatattacgttaatgctgcataatatatttttattggagattagttggtgtttataaatatgttatcatttactttatatttaatgagtgaaaatatattcggttgtccagtttagggtaactatgcctgataaaactttgattcattcatattatttattatttttttactttaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGA
>TCONS_00010900
aggttcattgcgatcccaaggttcactgcggttttccacaaggtaagtaaaaagtaaacaaataaacacgatttgttgataaagcatgtactgtaaactagtgacgttatctaattacatcaagttcatttattaaaaacatatttttcttacatataacgttggtcatgcattagaacaatatatacattttaagataaggaacagtgtaaccagattgttttccacaatagaattcgtgcaaaatctatatataatatgcaatatgcaactctaataatacaaatgtattcgtaattgttttaatattaaagaacatcaagtgtttccaaaggtttattgtaaaaacaattatttttcatgcctttaaaggaaaaaggcagaaattttgcccgtctgagcacattttattcattgtacaacacaaaactaaacaaaaaaatagcttaatctaccacacacacacacacacacacatatatatatatatatatatacaggtgtacattataaggtgttcactgttcagatatgaatattttttctttgctcttttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCACCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatgtgattgtatgagataaaatgcatttattctttcactactattgtaataacagaaagaaacgcattagttttactattactattgtttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagtggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgcccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacatttttttgttgtttttatctggtacagctcataggaactcaaatcttcccaactgtgagagggccttgctccagtgactgtcagtgtgtacttcattgtttccattagtccctgtatctgtagacctaggtgacagtgggctagagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaagatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCTTGATCTGTTCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAGATTAGAAGATAGAAACTGTCATACACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAACTATGTAATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACTTattggtttacttatttatttatttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGGTAACAATATCCAGTTGAATTTGTTTTAGTTGTTCAGTAACCTATTTAAATAGTATTGTGATTTTTTGATTGCTTATCATTGTAGACTGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcattttttttcagtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAactttctttttataaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAATGTActggtatgtatttgtattttttggcacagacataagcataaggttacccagtccaaaggatattaatatatttttatgttgttgtgttcttcttttaagattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagtaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagatttttttaaaataaagctccagctgatgagtatgacattgactgttgattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaa
>TCONS_00010730
actgtgagagggccttgctccagtgactGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACTGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcattttttttcagtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAATGTActggtatgtatttgtattttttggcacagacataagcataaggttacccagtccaaaggatattaatatatttttatgttgttgtgttcttcttttaagattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagtaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagatttttttaaaataaagctccagctgatgagtatgacattgactgttgattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtcatca
>TCONS_00010729
actgtgagagggccttgctccagtgactGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGGAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGGTAACAATATCCAGTTGAATTTGTTTTAGTTGTTCAGTAACCTATTTAAATAGTATTGTGATTTTTTGATTGCTTATCATTGTAGACTGCAACAGCTCTGCAAAGCAAGTTGCAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAATTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAATGTActgattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagtaacaaaataactgagaaataaacaacaatacgatggtgcaatctagagacctgcaaggtacctgcaagttttggctggagcagagaacatagatttttttaaaataaagctccagctgatgagtatgacattgactgttgattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaattaaataaaattgtcatca

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010728 False 927 lncRNA 0.37 3 15111405 15114276
TCONS_00010900 False 3289 lncRNA 0.34 1 15112124 15115412
TCONS_00010730 False 1021 lncRNA 0.39 4 15113429 15115431
TCONS_00010729 True 938 lncRNA 0.39 5 15113429 15115431

Neighbor

gene id symbol gene type direction distance location
XLOC_004592 CR456635.1 coding upstream 29038 15078124 ~ 15082367 (+)
XLOC_004591 mylpfb coding upstream 100409 15002757 ~ 15010996 (+)
XLOC_004590 NA coding upstream 295460 14815600 ~ 14815945 (+)
XLOC_004589 NA coding upstream 366703 14741152 ~ 14744702 (+)
XLOC_004588 becn1 coding upstream 407976 14556092 ~ 14703429 (+)
XLOC_004594 adprh coding downstream 33187 15148618 ~ 15196223 (+)
XLOC_004595 med1 coding downstream 157873 15273304 ~ 15311999 (+)
XLOC_004596 plxdc1 coding downstream 248032 15363463 ~ 15461462 (+)
XLOC_004597 CR749751.1 coding downstream 266263 15381694 ~ 15381814 (+)
XLOC_004598 arhgap23b coding downstream 361680 15477111 ~ 15561869 (+)
XLOC_004582 BX640453.1 non-coding upstream 1368729 13740216 ~ 13742676 (+)
XLOC_004581 CR354395.1 non-coding upstream 1453261 13658022 ~ 13658144 (+)
XLOC_004579 BX649204.1 non-coding upstream 1654049 13457237 ~ 13457356 (+)
XLOC_004602 NA non-coding downstream 788693 15904124 ~ 15925797 (+)
XLOC_004603 NA non-coding downstream 832605 15948036 ~ 15948551 (+)
XLOC_004611 NA non-coding downstream 1371534 16486965 ~ 16487567 (+)
XLOC_004612 NA non-coding downstream 1374767 16490198 ~ 16491806 (+)

Expression


Co-expression Network