LOC120562979


Basic Information

Item Value
gene id LOC120562979
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 46613279 ~ 46614741 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU16800
GTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTACGCGTTACCTGAAAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCGCACAGCTGAGAGGGACCCACAGCCGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAAGTGCCA
>XR_005639890.1
AGCGGGTCAAGTCTTCGAATTGTTGCTAACCTCTAGCTATATTGCTATGTTTTCTCCAGGTTATTTTGAATGGACAGCTTTGTCGCTGATAAGCTAACTGACTGGCGGCTGTCTGAGCTGACAGAGAATTTTAGAGgcCATCCACAAACATAAAAGAGGCCCTGGCGCTATCATTGGTTCAGACATTCCCTGAATGATGGATCAGAAATTGGCTatTTCCAGAGACTCCAGAATGAAAACCAAGCTCTGAGGGAGGAGAACCACACCCTGAGGGAAAGCAATGCACGAGCAGCGGCTCACTTCAAGAGCAGGTGAAGCAAGTTGGGACAATGTTGAAGACGTTTGCTTGCACTTGGCAATCAGGTGCAGATCAGATCCTAATGCTGCGACGTCTTGGAGAGTTTGGCGATGTTGTGCGTAGCATGGACAACAAAATGGAAACTATGCAGCAACATTTCAGTGCCAATGTGTCTGTTGGAGAGCCACTGATGAGGCGGTCCAGGTTAACGTTACGCGTTACCTGAAAGCATCTGACCGTGAAGGCGGAAAAAGGCGCCGCACAGCTGAGAGGGACCCACAGCCGACCCCTTAAACCTAGGCTGACTACTGACACCCCCGCATCACTGACAACTGGAACACTTTCTTTATCCTGCAGTCAGTAACATCAAGAAGCCAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16800 False 294 lncRNA 0.51 1 46614448 46614741
XR_005639890.1 True 678 lncRNA 0.49 5 46613279 46614735

Neighbor

gene id symbol gene type direction distance location
si:ch73-6k14.2 NA coding upstream 211914 46392846 ~ 46401365 (+)
LOC120562127 NA coding upstream 239439 46346970 ~ 46373840 (+)
LOC120557716 LOC104930044,LOC103368287,LOC102204811,LOC102301891 coding upstream 275946 46318376 ~ 46337333 (+)
gstt1b NA coding upstream 511952 46080099 ~ 46101327 (+)
ddt ddt,LOC103368817,LOC104931754,LOC108247357 coding upstream 534260 46068792 ~ 46079019 (+)
LOC120543662 NA coding downstream 1586129 48200870 ~ 48202754 (+)
neurl1aa LOC108246381,LOC103355274,LOC104926624,LOC102796982,LOC101477033,LOC102303708,LOC100693641 coding downstream 1599563 48214304 ~ 48320857 (+)
LOC120564817 slc24a3,LOC100695245 coding downstream 1882724 48497465 ~ 48609279 (+)
LOC120556912 rin2 coding downstream 1996538 48611279 ~ 48704119 (+)
LOC120556923 NA coding downstream 2099736 48714477 ~ 48721252 (+)
G12576 NA non-coding upstream 56180 46556592 ~ 46557099 (+)
G12575 NA non-coding upstream 68838 46544204 ~ 46544441 (+)
LOC120567408 osbpl5 non-coding upstream 91247 46518215 ~ 46522032 (+)
G12568 NA non-coding upstream 105886 46507064 ~ 46507393 (+)
G12566 NA non-coding upstream 131820 46481181 ~ 46481459 (+)
G12592 NA non-coding downstream 182 46614923 ~ 46615279 (+)
G12601 NA non-coding downstream 88284 46703025 ~ 46722961 (+)
G12609 NA non-coding downstream 133938 46748679 ~ 46749688 (+)
G12615 NA non-coding downstream 170553 46785294 ~ 46785694 (+)
G12621 NA non-coding downstream 227497 46842238 ~ 46842644 (+)
G12553 NA other upstream 195506 46416428 ~ 46417773 (+)
trnak-uuu_1 NA other upstream 405554 46207653 ~ 46207725 (+)
trnat-ugu NA other upstream 406275 46206932 ~ 46207004 (+)
G12491 NA other upstream 443590 46166405 ~ 46169689 (+)
trnae-cuc NA other upstream 448726 46164482 ~ 46164553 (+)
LOC120564084 LOC100694180 other downstream 231276 46846017 ~ 47125487 (+)
G12872 NA other downstream 1814059 48428800 ~ 48488219 (+)
G12873 NA other downstream 1870507 48485248 ~ 48486493 (+)

Expression


Co-expression Network