G12627


Basic Information

Item Value
gene id G12627
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 46938248 ~ 46938639 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU16840
gtgcgattttggccatttccacatgtcgtactttaacgaactcctcctagagatttcatccgatcaacttcaaacttggtctgtaccatcccaacaccttaatgatgaaaagttattaaaagaaaaacttttcgtcagacggtgtgggcgtggcgtggcggccattttgagtgtttagcgatgaacaaagaagttgttgtaacttgagtgtacgttgtcatatctgcccgaaatttctcacgaatcacaagggtccaggcctgaggacacctacaggccaaaattgacttttggtcatagcgccccccgctggcaacaggaaatgcgccttatatgacaaacatcatccgatttacatgaaacttagaatgtgtggtctacatgtgatactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16840 True 392 lncRNA 0.44 1 46938248 46938639

Neighbor

gene id symbol gene type direction distance location
si:ch73-6k14.2 NA coding upstream 536883 46392846 ~ 46401365 (+)
LOC120562127 NA coding upstream 564408 46346970 ~ 46373840 (+)
LOC120557716 LOC104930044,LOC103368287,LOC102204811,LOC102301891 coding upstream 600915 46318376 ~ 46337333 (+)
gstt1b NA coding upstream 836921 46080099 ~ 46101327 (+)
ddt ddt,LOC103368817,LOC104931754,LOC108247357 coding upstream 859229 46068792 ~ 46079019 (+)
LOC120543662 NA coding downstream 1262231 48200870 ~ 48202754 (+)
neurl1aa LOC108246381,LOC103355274,LOC104926624,LOC102796982,LOC101477033,LOC102303708,LOC100693641 coding downstream 1275665 48214304 ~ 48320857 (+)
LOC120564817 slc24a3,LOC100695245 coding downstream 1558826 48497465 ~ 48609279 (+)
LOC120556912 rin2 coding downstream 1672640 48611279 ~ 48704119 (+)
LOC120556923 NA coding downstream 1775838 48714477 ~ 48721252 (+)
G12626 NA non-coding upstream 25532 46912292 ~ 46912716 (+)
G12621 NA non-coding upstream 95604 46842238 ~ 46842644 (+)
G12615 NA non-coding upstream 152554 46785294 ~ 46785694 (+)
G12609 NA non-coding upstream 188560 46748679 ~ 46749688 (+)
G12601 NA non-coding upstream 215287 46703025 ~ 46722961 (+)
G12628 NA non-coding downstream 33752 46972391 ~ 46972679 (+)
G12636 NA non-coding downstream 164926 47103565 ~ 47103831 (+)
G12639 NA non-coding downstream 182577 47121216 ~ 47121517 (+)
G12625 NA non-coding downstream 187706 47126345 ~ 47127340 (+)
G12673 NA non-coding downstream 245580 47184219 ~ 47184548 (+)
G12553 NA other upstream 520475 46416428 ~ 46417773 (+)
trnak-uuu_1 NA other upstream 730523 46207653 ~ 46207725 (+)
trnat-ugu NA other upstream 731244 46206932 ~ 46207004 (+)
G12491 NA other upstream 768559 46166405 ~ 46169689 (+)
trnae-cuc NA other upstream 773695 46164482 ~ 46164553 (+)
G12872 NA other downstream 1490161 48428800 ~ 48488219 (+)
G12873 NA other downstream 1546609 48485248 ~ 48486493 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G93802 NA non-coding CI01000016 null 132552 ~ 138874 (-)