G12827


Basic Information

Item Value
gene id G12827
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 48199866 ~ 48200096 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU17058
aatagGCTATATGCACAGTTACTTCCTGGTTACGGACAAGCCAGCCCAATCACTTCCGGTCGTCTGTCGTCAGGTGAGCTTTCTGTCAGAGCcggcaaaaccaaaacaatgacttTCTACACTCGTTGCCTTCAAGACTTACCCCGTGTCACTATCAACGATGTACACCGTCTTATTAAGGCTTACTCAACCACGGCAtcaagcaaaaaagaaaaaggatttaAGCTGTAC

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU17058 True 231 lncRNA 0.39 1 48199866 48200096

Neighbor

gene id symbol gene type direction distance location
si:ch73-6k14.2 NA coding upstream 1798501 46392846 ~ 46401365 (+)
LOC120562127 NA coding upstream 1826026 46346970 ~ 46373840 (+)
LOC120557716 LOC104930044,LOC103368287,LOC102204811,LOC102301891 coding upstream 1862533 46318376 ~ 46337333 (+)
gstt1b NA coding upstream 2098539 46080099 ~ 46101327 (+)
ddt ddt,LOC103368817,LOC104931754,LOC108247357 coding upstream 2120847 46068792 ~ 46079019 (+)
LOC120543662 NA coding downstream 774 48200870 ~ 48202754 (+)
neurl1aa LOC108246381,LOC103355274,LOC104926624,LOC102796982,LOC101477033,LOC102303708,LOC100693641 coding downstream 14208 48214304 ~ 48320857 (+)
LOC120564817 slc24a3,LOC100695245 coding downstream 297369 48497465 ~ 48609279 (+)
LOC120556912 rin2 coding downstream 411183 48611279 ~ 48704119 (+)
LOC120556923 NA coding downstream 514381 48714477 ~ 48721252 (+)
G12826 NA non-coding upstream 4134 48195518 ~ 48195732 (+)
G12825 NA non-coding upstream 9230 48190349 ~ 48190636 (+)
G12823 NA non-coding upstream 10068 48189253 ~ 48189798 (+)
LOC120544319 NA non-coding upstream 97902 48101483 ~ 48101964 (+)
G12805 NA non-coding upstream 106835 48092771 ~ 48093031 (+)
G12844 NA non-coding downstream 127919 48328015 ~ 48329753 (+)
G12845 NA non-coding downstream 130358 48330454 ~ 48331505 (+)
G12846 NA non-coding downstream 134129 48334225 ~ 48334737 (+)
G12849 NA non-coding downstream 138769 48338865 ~ 48339107 (+)
G12850 NA non-coding downstream 139096 48339192 ~ 48339516 (+)
LOC120564084 LOC100694180 other upstream 1074379 46846017 ~ 47125487 (+)
G12553 NA other upstream 1782093 46416428 ~ 46417773 (+)
trnak-uuu_1 NA other upstream 1992141 46207653 ~ 46207725 (+)
trnat-ugu NA other upstream 1992862 46206932 ~ 46207004 (+)
G12491 NA other upstream 2030177 46166405 ~ 46169689 (+)
G12872 NA other downstream 228704 48428800 ~ 48488219 (+)
G12873 NA other downstream 285152 48485248 ~ 48486493 (+)

Expression


Co-expression Network