LOC120568412


Basic Information

Item Value
gene id LOC120568412
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 3954828 ~ 3963879 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU1936
gacattTCTAGGTTTGGATGTAAAGGAGGGAGGAAGTGATGaacacagacagcagcagcGTCTGTCAGAGTCTGCAGACGGAGGAGGACGTCTCTCTGACCTGATCTGGACGGGACTTTAACAGGtcgccgttgcaaatgagaacctgttctcaacggcctacctggaTGAGTGAGTTTCTCCACCCACAACGTGACAACTACCTTTGCAAAGTGAGAGCAGCTGGGATGTTATGCAGAATGGAAAAGTTGTTTAGCCGGGCTGTGGATGCAGAAACTTTACACCTTGcccagagcagcagcagagaccagactctcctgaacctgaaccagctgtgtgtccatcaAGAGCCACCAGTCCATGGATCCACCTTAAGTGTTTAAAGGACAGCTTCCTGCAGAGACTCA
>XR_005640722.1
TCAGAGTGCTGACTGACAGAGCTTTAGTAACGCTGCCagctgcttctgactggcagAACTCCAGCTCAGACCGGCCCTCTGCtctgatgtcagactgacattTCTAGGTTTGGATGTAAAGGAGGGAGGAAGTGATGaacacagacagcagcagcGTCTGTCAGAGTCTGCAGACGGAGGAGGACGTCTCTCTGACCTGATCTGGACGGGACTTTAACAGGtcgccgttgcaaatgagaacctgttctcaacggcctacctggaTGAGTGAGTTTCTCCACCCACAACGTGACAACTACCTTTGCAAAGTGAGAGCAGCTGGGATGTTATGCAGAATGGAAAAGTTGTTTAGCCGGGCTGTGGATGCAGAAACTTTACACCTTGcccagagcagcagcagagaccagactctcctgaacctgaaccagctgtgtgtccatcaAGAGCCACCAGTCCATGGATCCACCTTAAGTGTTTAAAGGACAGCTTCCTGCAGAGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1936 False 407 lncRNA 0.39 4 3954828 3963783
XR_005640722.1 True 501 lncRNA 0.52 4 3954830 3963879

Neighbor

gene id symbol gene type direction distance location
LOC120568380 NA coding downstream 9412 3913798 ~ 3945416 (-)
LOC120568258 NA coding downstream 53081 3879887 ~ 3901747 (-)
slc8a1a LOC100709284,LOC101487495,LOC102200447 coding downstream 101031 3821980 ~ 3853797 (-)
srd5a2a NA coding downstream 271958 3666913 ~ 3682870 (-)
trnak-uuu NA coding downstream 527806 3426950 ~ 3427022 (-)
LOC120568386 NA coding upstream 13412 3977291 ~ 4228514 (-)
LOC120568358 LOC103148993,LOC108243373 coding upstream 38558 4002437 ~ 4004792 (-)
LOC120568346 NA coding upstream 42191 4006070 ~ 4013823 (-)
LOC120562966 NA coding upstream 75290 4039169 ~ 4077987 (-)
LOC120568355 LOC103356192,LOC104948400,LOC105918398 coding upstream 270004 4233883 ~ 4240654 (-)
LOC120568407 NA non-coding downstream 78250 3873544 ~ 3876578 (-)
G1318 NA non-coding downstream 85050 3869463 ~ 3869778 (-)
G1312 NA non-coding downstream 137974 3816015 ~ 3816854 (-)
G1311 NA non-coding downstream 138991 3814613 ~ 3815837 (-)
G1304 NA non-coding downstream 140295 3774301 ~ 3814533 (-)
LOC120568400 NA non-coding upstream 8142 3972021 ~ 3974470 (-)
G1436 NA non-coding upstream 275364 4239243 ~ 4321225 (-)
G1440 NA non-coding upstream 283783 4247662 ~ 4251483 (-)
G1459 NA non-coding upstream 369210 4333089 ~ 4333324 (-)
G1477 NA non-coding upstream 456289 4420168 ~ 4450896 (-)
G1242 NA other downstream 282290 3648688 ~ 3672538 (-)
dpy30 NA other downstream 290439 3659840 ~ 3664389 (-)
LOC120555401 tmem63a,LOC106529083,LOC106934241,LOC103130112,LOC106936753,LOC102796925 other downstream 306355 3494887 ~ 3648473 (-)
G1240 NA other downstream 306598 3581218 ~ 3648230 (-)
LOC120551303 NA other downstream 544533 3408821 ~ 3410295 (-)
G1464 NA other upstream 381668 4345547 ~ 4346086 (-)
G1623 NA other upstream 677707 4641586 ~ 4788577 (-)
LOC120563598 NA other upstream 810938 4774817 ~ 4783916 (-)
G1722 hnrnpll,LOC108249392,LOC104956991,LOC106530872,LOC103368822 other upstream 1112727 5076606 ~ 5085518 (-)
G1726 NA other upstream 1133490 5097369 ~ 5097634 (-)

Expression


Co-expression Network