LOC120566368


Basic Information

Item Value
gene id LOC120566368
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 907840 ~ 1012869 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU253
GTGATGTATGGAAGACAATTCCAAACAGCAAAAAGAGATTTTcttattgtatttgtgttttaggAAAGCAGAGTTTCTCTTCAGGTAGATTGTACTTTGAGGTGCAAgttaaagaaaaaactaaatggaCTTTAGGAGTGGCCAGAGAGTCAATCAACAGAAAGGGAGACATCACACTGAGCACTAAGGATGGTTACTGGACAATATGGTTGAGAAATGGAAATAAGTACAAAGCTTCTGCTGGCCCTGatgtccttctctctctgaagtctcctcctcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgacgtagatgctgcagcccttatctactcctttactggctgctccttcactgagaaaTTCTTCCCATTCTTCCATACTGGTAATAATGAAGGTGGTACAAACTCTGCccctctgatcatctctcctgtcagaATGAACTGATCACTGATCTCATTTCaggtattgatttattttcaatCAAGGGACCAAATGTACATATTCTTATATTTTACATCTTATTTTCTACAGAATCTGTTTCCTGTGGTGACTGATCTACTGTTTATTCCATTTATTATCATATGGTTAAATCTACAGCAATTCTTTGAAAATTGAATCAAACTtgggtgtttgtggattatgaggagggtctggtctccttttatgGCGTAGATGCTGCAGTCcttatctactcctttactggctgctccttcactgagaaactcttcccATTCTTCCATACTGGTAGGAATGAAGGTGGTAAAAACCCTGCccctctgatcatctctcctgtcagagTAAACTAATCACTGATCTCATTTCAGGTATTgatttgttttcaataaaaggAACAAatgtacatattcatatattttacaTCTTATTTTCTACAGAATCTGTTTCCGGTGGTGACTGATTTACACTTTATTCCATTTATTATCATATGGTTAAATGTGCAGCAATTCTTTGCAATTTGAATCAAACTTCATCTTGACATATTTGGTGTCTTTAGAAACTGATTTCTTCTGGAAGTTATAATAACTGTCTGTGGGTTTAACAGAGGTTTAAATAGATATCGTTCACATAACGTGTGTCATGATGCATCAAATTAATGTGTTGATTATGTAATCGGATACACATTTGTATTTGATGGGCAACATTATGCTGAATATTTCATTAtgtcatgaagcttcatttaagAGTAAGGCCTAGTACATCCCATAGTGTTTACAGAACACAGTTTGTGTCATTATACCGGGTATAAAAAATTAATGGATGTTTCTATCTTGTGTGAAAAGTGTTTTGGATAATTACTGGTCACTTtggccatttttttatttgtttcatgaATTGTGTAAGATGGTTTATGAGTCAAAGAAATCTGTAAATATGTGATTGTAAAATAAAGTAGTTGTTGAACACAAGGCCTGAGTAAGCAGTGATTTGAGCACTAAACACTGAACAGAAAAGCTGGTTTACACAGAAGTTGTATTTCATTACAAATACATTGTTTTCCTGTGactgcttcaaaataaaagccttgaTGTGTTTCACCAGATGGTtccttttaatgtgaagcagtggaggaggaaatgTTTG
>XM_039812759.1
CACTGGAAAGAGGAGAGATACAACGTCACACTCCAGAAATTAAAGTTAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTAGAGACAagactctgtttctctctgaaagaaaactcaaactgactTCATCAGGTCTTTCTCAACAACACAGCAGAGTCTCTGCCAAACACTGCACGAAGCCACAATGACGGCAGTGGACCTTTTCAACACTTTGGAGGATTTAAAAGAAGAGGAATTTAAGAAATTCAAATGGTGTCTGCAGCAAGACATCCTGGAAGGCTACCAAAGCATCAAAGTGGCCAAGTTGGAGAACACAGAAAGGCAGGACACGGTGGATGTGATGGTGAAAACCTATCACCTTCAAGGAGCTCTGAAGGTGACCAAGAAGGTTTTAGAGAAGATCAACAGGAATGATCTGGTGCAGAGTCTGCCAGACACCAGCTCAGGACCAGAAGATATGGCTGCTGCAAACTACCTCCAATctgaagatcagtttctgtgctccatctgtctggatgtgttcactgatccTGTGACTACATCATGTGGTCACAACTTCTGCAAAAACTGCATCACTGAACACTGGAATACTAATGACCACTACCTGTGTCCCCTGTGTAAGGAGGGTTTTACCACAAGACCTGATTTGAGGGTCAACACTTTGTTCTCTGAGATGGTTTCTCAGTTCAGACAGTCAGCTCAacagaaagccagcagcagcagctcagagcaacaagggtccaaaccaggagaagttccctgtgatgtctgcactggaaccaaactgaagtccctgaagtcctgcctggtgtgtctggtctcctactgtgagactcacctggagcctcatctgaCCATGTCAGGCCTCaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccgaccagacatgtgtctgcatgctctgcACTGTTTTAGATCACAAGACACATGATGTTGTTCTTCTGACAGAAGGATATGAAGAAAAGAAGGTGGAACTTGGGAATACAGAAGCTGAAATTGAggagatgatccagaagagacgaCTGAAGATTGAGGAGGTCAAACACTCAGTTGAcctcagtgaggaagatgcagacaTAGAGATAGCAGAAGGTATTCGGGTCTTCACTTCTTTAAAGGAGTCTGTTGACAGAGGTCAGACCACTCTCATCAAAACAATagaagagaagcagaaaacaacaaaaagaaaggcTGAAGCTTTTGtcaaagagctggaacaggaaatctctgagctgaaaaagagaagaacagaggtggagcagctctcacgctctgaagaccacctccatcttctccagagtGTCCAGTCCCTAAACACCATCCACCCTCCACCCACCAAGGACTGGACAGAAGTCGGATTTTCGTCACCGTCATATGAAGGGATTGTAGTGAGAGCTGTGGCAAAACTCGAGGAGACCCTTGGTGAAGAGACTATCGAGCTCCTCCAAGCAGAGCTGTGGAGGGTccagcagtatgcagtggatgtgactcttgatcctgatacagcaCATCCTAATCTCTTCCTGTCTGATGATGGGAAACAAGTGAGTAATAGTGATCTGAAGAAGAATGTTCCAGACAACCCAAAGAGATTTGATGTTTGGAATTGTGTTTTAGGAAAGCAGAGTTTCTCTTCAGGCAGATTTTACTTTGAGGTTCAAGTTAAAGGAAAGACTTCCTGGGAGTTCGGTGTGGTCAGAGAGTCGATCGACAGAAAGGGAGGCATGCCACTGAGCCTTGGGGATGGTTTTTGGACGATATGGTTGACAAATGGAAATGAGTACGAAGCTAATGACCACTTTAttctctctctgaagtctcagcctcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgGCGTAGATGCTGCAGTCcttatctactcctttactggctgctccttcactgagaaactcttcccATTCTTCCATACTGGTAGGAATGAAGGTGGTAAAAACCCTGCccctctgatcatctctcctgtcagagTAAACTAATCACTGATCTCATTTCAGGTATTgatttgttttcaataaaaggAACAAatgtacatattcatatattttacaTCTTATTTTCTACAGAATCTGTTTCCGGTGGTGACTGATTTACACTTTATTCCATTTATTATCATATGGTTAAATGTGCAGCAATTCTTTGCAATTTGAATCAAACTTCATCTTGACATATTTGGTGTCTTTAGAAACTGATTTCTTCTGGAAGTTATAATAACTGTCTGTGGGTTTAACAGAGGTTTAAATAGATATCGTTCACATAACGTGTGTCATGATGCATCAAATTAATGTGTTGATTATGTAATCGGATACACATTTGTATTTGATGGGCAACATTATGCTGAATATTTCATTAtgtcatgaagcttcatttaagAGTAAGGCCTAGTACATCCCATAGTGTTTACAGAACACAGTTTGTGTCATTATACCGGGTATAAAAAATTAATGGATGTTTCTATCTTGTGTGAAAAGTGTTTTGGATAATTACTGGTCACTTtggccatttttttatttgtttcatgaATTGTGTAAGATGGTTTATGAGTCAAAGAAATCTGTAAATATGTGATTGTAAAATAAAGTAGTTGTTGAACACAAGGCCTGAGTAAGCAGTGATTTGAGCACTAAACACTGAACAGAAAAGCTGGTTTACACAGAAGTTGTATTTCATTACAAATACATTGTTTTCCTGTGactgcttcaaaataaaagccttgaTGTGTTTCA
>XM_039812767.1
CTGGAAAGAGGAGAGATACAACGTCACACTCCAGAAATTAAAGTTAAGTTTGTCAGAGTGTCAGCCACGCTGCAGTAGAGACAagactctgtttctctctgaaagaaaactcaaactgactTCATCAGGTCTTTCTCAACAACACAGCAGAGTCTCTGCCAAACACTGCACGAAGCCACAATGACGGCAGTGGACCTTTTCAACACTTTGGAGGATTTAAAAGAAGAGGAATTTAAGAAATTCAAATGGTGTCTGCAGCAAGACATCCTGGAAGGCTACCAAAGCATCAAAGTGGCCAAGTTGGAGAACACAGAAAGGCAGGACACGGTGGATGTGATGGTGAAAACCTATCACCTTCAAGGAGCTCTGAAGGTGACCAAGAAGGTTTTAGAGAAGATCAACAGGAATGATCTGGTGCAGAGTCTGCCAGACACCAGCTCAGGACCAGAAGACATGGCTGccaaaccaggagaagttccctgtgacgtctgcactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtctcctactgtgagactcacctggagcctcatctgacagcttcacgtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGGATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccgaccagacatgtgtctgcatgctctgTACTGTTTTAGACCACAAGACCCATGATGTTATTCCTCTGAAAGAAGGATATGAAGGAAAGAAGGCAGAGCTGGGGAAGACAGGGGCTGAAATCCagcagatgatccagaagagacgaCTGAAGATTCAGGAGGTCAAACATTCAGTCGACCTCAGTGAGGAAGattcagacagagagatagcagaaggtgttcaggtcttcacttctctgaaggagtctgttgagagaggcctgaatgagctcatcaacacgatcaaaaagaagcagaaaacaacagaaaaacaggctgaagctttcatcaaagagctggaacaggaactctctgagctgatgaagagaagcactgaggtggagcagGTGTTACACTCTGAAGaccacctccatcttctccagagtGTCCAGTCCCTAAACATCCAAAAACCTCCACCCACCAATGACTGGACAGAGGTCAGTGTCCATCCATCGTCATATGAAGGGACTGTGGTGAAAGCTGTGGTTCAGCTGGAGGAGACATTCAGTAaagagatgaagaagctgcttgagtctgagctgaagagggtccagcagtatgcagtggatgtgactcttgatcctgatacagcaTTTCCTGGtctcatcctgtctgatgatGGGAAACAAGTGAATCATGGTGATGTGAGGAAGAATCTCCCAGACAACCCAGAGAGATTTTCTCTTTATTGTATTGTTTTAGGAAAACAGAGTTTCTCTTCAGGCAGATTTTACTTTGAGGTTCAAGTTAAAGGAAAGACTAAATGGACTTTAGGAGTGGCCAGAGAGTCGAGCAACAATAAAGGAAACATCACACTGAACCCTCAGAAAGGTTACTGGACTATGTCGTTGAGAAATAGAAATGAGTACAAAGCTTCTGCTgatgtccctctctctctgaagtctcctcctcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgacGTAGATTCTGCAActcttatctactcctttactggctgctccttcactgagaaactcttcccATACTTCCATACTGGTAATAATAATGGTGGTAAAAACTCTGCCCCTCTGATCGTCTCTCCTGTCAGAGTAAACTAATCACTGATCTCATTA

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU253 False 1625 lncRNA 0.39 2 934177 1012869
XM_039812759.1 True 2843 mRNA 0.43 4 907840 1012823
XM_039812767.1 False 1833 mRNA 0.46 3 907842 914983

Neighbor

gene id symbol gene type direction distance location
LOC120566870 NA coding upstream 49307 840662 ~ 858533 (+)
LOC120566667 NA coding upstream 100797 632750 ~ 807043 (+)
LOC120566718 NA coding upstream 115935 788102 ~ 791905 (+)
LOC120566682 NA coding upstream 134115 756425 ~ 773725 (+)
LOC120566650 NA coding upstream 190169 712986 ~ 717671 (+)
LOC120566725 NA coding downstream 53829 1066698 ~ 1072641 (+)
LOC120566475 NA coding downstream 80150 1093019 ~ 1103529 (+)
LOC120566383 NA coding downstream 125209 1138078 ~ 1171265 (+)
LOC120566742 NA coding downstream 136137 1149006 ~ 1150498 (+)
LOC120560623 LOC104959125,LOC102294989,LOC102198497,LOC101481490 coding downstream 194049 1206918 ~ 1215606 (+)
LOC120566926 NA non-coding upstream 15717 891621 ~ 892123 (+)
G270 LOC103372508 non-coding upstream 95893 808561 ~ 811947 (+)
G261 NA non-coding upstream 215611 686445 ~ 692229 (+)
G221 NA non-coding upstream 384851 522532 ~ 522989 (+)
G55 NA non-coding upstream 497378 409741 ~ 410462 (+)
LOC120566887 NA non-coding downstream 289844 1302713 ~ 1303535 (+)
G309 NA non-coding downstream 338651 1351520 ~ 1352050 (+)
G310 NA non-coding downstream 341267 1354136 ~ 1354378 (+)
G321 LOC106675347,LOC106676307,LOC106676577,LOC107663003,LOC107395936,LOC107379945 non-coding downstream 370261 1383130 ~ 1383452 (+)
G322 NA non-coding downstream 371588 1384457 ~ 1384658 (+)
LOC120566394 NA other upstream 154078 708153 ~ 753762 (+)
G176 LOC104946033 other upstream 309633 583390 ~ 598207 (+)
G184 NA other upstream 425950 477971 ~ 481890 (+)
rrp36 rrp36 other upstream 587061 291233 ~ 320779 (+)
LOC120560073 LOC103372506,LOC102203670,LOC101482513,LOC102296948 other upstream 683244 200413 ~ 224596 (+)
G199 NA other downstream 4038 1016907 ~ 1019038 (+)
G292 NA other downstream 103755 1116624 ~ 1144413 (+)
G165 NA other downstream 131785 1144654 ~ 1158559 (+)
G151 NA other downstream 180792 1193661 ~ 1219085 (+)
G149 LOC104959125,LOC105030654 other downstream 298998 1311867 ~ 1312431 (+)

Expression


Co-expression Network