G1820


Basic Information

Item Value
gene id G1820
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5887302 ~ 5958266 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU2540
ACAAACATTTCCTCCTGCCACtccttcacattaaaagcatcCAACTGGTGAAACACACCgggagcttttattgtgaagcagccaCAGGAAACGCAATGTACTGGTAATGAAATACAACTTATCTGTAAACCAGCTTTTCTGTTCGGTGTTTGGTGTTCAAGTCACTGTTTACTCAGGCCTTGTGTTCAACATCtggtttattttacagtttttctttttataatcaCATAAGGATTTCTTTGACTTATAAACCAATCTTAcccacaaaagacaaaaaataaacgAAGTGACTAATAATGAACTAAAACACTTTTCATACAAAATAAACATTCATTAACCTTTTATACATGGTATGATAACGACATATATTCACACTGTGTTCTGTAGACAACTATAGACATGTAACAGGCCTTAAGCTGCGTTCAGACCAAAGAAAGTGATGCACAGATTTTTGGCAGGGTTGTGCAGCGGTGGGAGTGTCACTGAAACAGCCTATTTGTGTGACttcccaatgtagcacaagtacactttatatttcacactgttttctgtcagatcgtttatagatctcgACATTTCCGACTgaacttgaaggcagctttatttcccggagaaagagagaaagaaaagagatgagcGAGATATagcgagtgctttgttgttgaaGGAAACATTCGAGGGACTGACGGAGGGACtgaggaaacagtcagctgttccccaaactcccgggcagttcagagcttgtgtttggggCTTTAAAACGTTCTcgtggcagagatagaggcagtgatgtttcccgtTTCGTGTActggactctcacaccgccttcAAACACtctgacaagtctgatctctGGTTACATGATTGGCAAACATTTATTTCcctgaatgaaaataaataaatcaaagttaagtgattagtttactctgacaggagagatgatcagagggGCAGAGTTTTCACCATCATCATTACTACAGGGACCAAAGTATgggaagagtttctcagtgaaagagcagccagtaaaggagtagataagagATGCAGCATCTAGgtcataaaaggagaccagaccctcctcataatccacaaacacccccaccttctgaggaggagacttcagagagagaCTGACTGAAGGGTTAGCAGCAGCTATGTACTCATTTCTATTTCGCAACCATAAAGTCCAGTAACCATCCTCAGGGCTCAGTGTGATTTCTCCCTTCCTGTTGACCGACTCTCTGGCCACTCCTAAatctagggctgaa
>TU2541
ACAAACATTTCCTCCTGCCACtccttcacattaaaagcatcCAACTGGTGAAACACACCgggagcttttattgtgaagcagccaCAGGAAACGCAATGTACTGGTAATGAAATACAACTTATCTGTAAACCAGCTTTTCTGTTCGGTGTTTGGTGTTCAAGTCACTGTTTACTCAGGCCTTGTGTTCAACATCtggtttattttacagtttttctttttataatcaCATAAGGATTTCTTTGACTTATAAACCAATCTTAcccacaaaagacaaaaaataaacgAAGTGACTAATAATGAACTAAAACACTTTTCATACAAAATAAACATTCATTAACCTTTTATACATGGTATGATAACGACATATATTCACACTGTGTTCTGTAGACAACTATAGACATGTAATAGGCCTTAAGCTGCGTTCAGACCAAAGAAAGTGATCTGGAGATTTTTGGCAGAGTTGTGCAGCAGTGGGAGTGtcactga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2540 True 1268 lncRNA 0.48 2 5887302 5958266
TU2541 False 486 lncRNA 0.36 2 5887302 5944941

Neighbor

gene id symbol gene type direction distance location
LOC120563910 NA coding upstream 84068 5790297 ~ 5803234 (+)
LOC120564476 NA coding upstream 279501 5606454 ~ 5607801 (+)
LOC120564466 NA coding upstream 296294 5589669 ~ 5591008 (+)
ndufaf5 ndufaf5 coding upstream 369194 5501032 ~ 5518108 (+)
btbd3a LOC103354797,LOC102313104,LOC101466369,LOC100710091,LOC102793615,LOC104954790 coding upstream 515532 5361351 ~ 5371770 (+)
prokr1a LOC103383410,LOC101078632 coding downstream 80945 6039211 ~ 6058589 (+)
LOC120563871 NA coding downstream 130586 6088852 ~ 6093727 (+)
LOC120563868 NA coding downstream 146879 6105145 ~ 6109440 (+)
LOC120563973 NA coding downstream 162128 6120394 ~ 6127443 (+)
LOC120563935 NA coding downstream 174369 6132635 ~ 6146027 (+)
G1836 NA non-coding upstream 29032 5767143 ~ 5858270 (+)
G1817 NA non-coding upstream 194829 5689969 ~ 5692473 (+)
G1813 NA non-coding upstream 236142 5637700 ~ 5651160 (+)
G1792 NA non-coding upstream 399553 5483542 ~ 5487749 (+)
G1791 NA non-coding upstream 411637 5474433 ~ 5475665 (+)
G1840 NA non-coding downstream 1949 5960215 ~ 6016641 (+)
G1833 LOC104946033 non-coding downstream 12959 5971225 ~ 5984068 (+)
G1825 NA non-coding downstream 23899 5982165 ~ 6031193 (+)
G1831 LOC103463036 non-coding downstream 46127 6004393 ~ 6022020 (+)
G1897 NA non-coding downstream 81326 6039592 ~ 6130467 (+)
acaa1 acaa1,LOC102793903 other upstream 415893 5387393 ~ 5471409 (+)
G1775 NA other upstream 512395 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 559385 5235346 ~ 5327917 (+)
G1756 NA other upstream 664558 5218068 ~ 5222744 (+)
G1600 NA other upstream 848588 4977783 ~ 5038714 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 427335 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 449134 6407400 ~ 6437217 (+)
G1973 NA other downstream 574175 6532441 ~ 6534370 (+)
G2530 NA other downstream 1740999 7699265 ~ 7699540 (+)
G2557 NA other downstream 1983281 7941547 ~ 7948253 (+)

Expression


Co-expression Network