G1831 (LOC103463036)


Basic Information

Item Value
gene id G1831
gene name LOC103463036
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6004393 ~ 6022020 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU2552
ctcatctgttgacatttccgaatgccttcctacagttgcgtaaagtggccgtagtagttatgacggaagcaaagcaggaagtaaggtgaagTATAAATGTGGCAagtttacagattttattttacaatcaCATAGAGCATTTACAAATTTCTTTAACTCATAAGCTGTCTTACCAGTATTCACAAAACTAATCAAAAGTGaccagtaaaaaaacaaaacaattaaaaaatagaAATCTTCCTTAACTTTTTATATTCGGTATAACAACATGTGTAGATGCTAAAAAAGGCCTTactcttaaataaaaattaataacACAATCAAATATTCAGCAATATTTTTTCTTCGGCTGCATATCAAATTgaaaaatttaaagaaatctacattttttgtgtgcaaaaaataCCCAATTCACTTTAGAAACATTTATTAGTGATTCTTTGAAAGTGAAAAAATGTCTGTGGGTTTAAATAGAAATTCTGTCATGATGCAGAGTTGAAGAGATGAATGCATCAAATCAATTTGTTGCCTATGTAATGGGACACATAATAATCAATCAAAAAAGTGTAAATCAATCACCACAGGAAACAGATtctgtaaacaaataagatgtAAATTATAAAATGTTCATTTCTTCCCTTGAATAGCAATTATTCAATACATGAAATAAGATCAGTGACTAGTTTActctgacaggagagatgatcagagggGCAGAGTTTTTACCACCATCATTATTACAGGGATTGAAGAATgggaagagtttctcagtgaaggagcagccagtaaaggagtagataagagctgcagcatctacgtcataaaaggagaccagaccctcctcataatccacaaacacccccaccttctgagggggagacttcagagagagaaCAGGAAATCATAACATGTACAAACCTCGAGTTTCTTTCTAAGGAAACTGAAGTAGGAATGTTGTCCGTCCAGCATTGGCTCGCCTCCTACTGCAGCTCTGTTATTAGGTTTTGTTTCCTCGTACGTTTTTATTACTTTAGTTACGTACAGATGTTTCCCTGGCTTAACATAAGGTGAAGCTGGTACTGTACCTAACTTCTATGTGAGGTTATTTTGAGGGGAAACCCATACTTGTTAATGAGGAACCACTTGAGTTTGTGGAAGATTTCACCTATCTGGGCAAGGCTGGGAAAGGCTCAGGGTGCCTTCTCCCAACTCCGTCCCATCTGGAgatcaaaacacaaaatagtgGCTAGCAAAAATGCTGCGTCACTAACTAAATAATAGCCAGAGTGGGGAATGTCAAGCCCTGAATGTAGGCCTGTGTAATGAAatgcatacaaaaacacatttctgacTACCTTACCAATTTACTACAGGTGTGACCTCCAAAGAGTTTAAACTGCAGAAACACTGAAGCCcaaaaacaagaagaaagaaaaaaggtgaATGAACTTGTAACAACATGTAcaaactagagatgttccgataccagtatcggtatcggctccgacaCTGCccaaaacgctggtatcggtatcgggaagtactggagtttatgcatcAATCCGATACCGCGTAagaaagccctaaagaaaatctatgttaaagtagtttatttatgttatttttccattataactgactgtcaaactggagaataaaagaaagttctgtggcgttcattgtttgtgtgtgtttatgtttcacaaagagtttaacgtGAGacagactgacaacaaagatagaagtAATATCATATCCATACAGGGACATCAGTacacagttgttaaaacataatacaatataTGAAACACTGGTATCTGATCGGTATTCGGTATCGGATGATACGCAAGTTCaagtatcagaatcggtattgggaagcaaaaaatggtatcgggccatctctagtacAAACCCCATTGGAATGTTGTCTGTCCAGTGTTGCTCTGCCTCTTAACCGCCTCTCTGTTTTTTAGGTTTTGTTTCCTCATATTTAGATATGATTTTAGTAACACTCAGGTGTATAGCGTAGGTGGCTTCTAGGGCTCCAGGAGGGACGTGCACAGACAGGGGGCAGGGGCAGGGGCTCAAAGAAAAAAGGTTCTAGTAATAgaaatttaaacaaaatgttaaataggcctatattaacACATCTGACTACTCtaccaatttattttattttccttgcACAACTGTTTAATAGATTTAATAAATACTCAACAAGTAATCAGTTCACACAGAGATTTTTTAGCATTCACCAGGTTAATCACCATCAGCAAAGGACACTCTGCTACAATGTGCATGTTTCTAGTTTCAATTATATATTTAGAATAAGCCCCAAGGAGATGGACTTAGTTTCACTAAAAATTGGTTTATTTTGCAAATGGCAATAAATCATGATCATTCTTTTGGTGCTATTGAAATAAAttactaagacgagacgatgacgagaatgcaccaatgtccaaaaacgctgactacgactaaattaacatgcattattgttgatgaaaaaagacaagactaaaatgttttgtataaaataaaaactaagataaaatatCTCTTCATTTTTGCCTACAATGTCTATACTTttccatcatgagatagaatattcagctgttacgcCTTCGGgtgtttgactgaaatggttatcagaaataatttatttaaaaaaaagacaaatgttttGACTTAAACTTGACTAAGACATACTGAGTTTTCTTTTAACTAAAAGTAGACTAAAATgatgagacttttagtcgactaaaacttgactaacaaaaaaaaaaaagggtatgtgaatgactaaatatgactgaAACTGACAAGAACagttggcacaagactaagactaaattaaaaacagGTGACAAAATGAACACTAGTGGGGGGGTGATTCAAACTCCACAATCACTGCTGGTGAACACAAACATTTCCTCCTGCCGCtccttcacattaaaagcatcCAACTGGTGAAACACACAgggagcttttattgtgaagcagccaCAGGAAACACAATGTACT

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM21-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2552 True 3027 lncRNA 0.41 2 6004393 6022020

Neighbor

gene id symbol gene type direction distance location
LOC120563910 NA coding upstream 201159 5790297 ~ 5803234 (+)
LOC120564476 NA coding upstream 396592 5606454 ~ 5607801 (+)
LOC120564466 NA coding upstream 413385 5589669 ~ 5591008 (+)
ndufaf5 ndufaf5 coding upstream 486285 5501032 ~ 5518108 (+)
btbd3a LOC103354797,LOC102313104,LOC101466369,LOC100710091,LOC102793615,LOC104954790 coding upstream 632623 5361351 ~ 5371770 (+)
prokr1a LOC103383410,LOC101078632 coding downstream 17191 6039211 ~ 6058589 (+)
LOC120563871 NA coding downstream 66832 6088852 ~ 6093727 (+)
LOC120563868 NA coding downstream 83125 6105145 ~ 6109440 (+)
LOC120563973 NA coding downstream 98374 6120394 ~ 6127443 (+)
LOC120563935 NA coding downstream 110615 6132635 ~ 6146027 (+)
G1833 LOC104946033 non-coding upstream 20325 5971225 ~ 5984068 (+)
G1873 NA non-coding upstream 44292 5897705 ~ 5960101 (+)
G1871 NA non-coding upstream 45747 5880353 ~ 5958646 (+)
G1820 NA non-coding upstream 46127 5887302 ~ 5958266 (+)
G1886 LOC104947167 non-coding upstream 49130 5941449 ~ 5955263 (+)
G1897 NA non-coding downstream 17572 6039592 ~ 6130467 (+)
G1900 NA non-coding downstream 40108 6062128 ~ 6063637 (+)
G1898 NA non-coding downstream 89194 6111214 ~ 6111601 (+)
G1905 NA non-coding downstream 97027 6119047 ~ 6119529 (+)
G1906 NA non-coding downstream 103347 6125367 ~ 6126533 (+)
snrpb2 snrpb2 other upstream 88019 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 532984 5387393 ~ 5471409 (+)
G1775 NA other upstream 629486 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 676476 5235346 ~ 5327917 (+)
G1756 NA other upstream 781649 5218068 ~ 5222744 (+)
LOC120573424 lgalsl,LOC104947409 other downstream 363581 6385601 ~ 6402640 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other downstream 385380 6407400 ~ 6437217 (+)
G1973 NA other downstream 510421 6532441 ~ 6534370 (+)
G2530 NA other downstream 1677245 7699265 ~ 7699540 (+)
G2557 NA other downstream 1919527 7941547 ~ 7948253 (+)

Expression


Co-expression Network