LOC120566414 (LOC104946033)


Basic Information

Item Value
gene id LOC120566414
gene name LOC104946033
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 926306 ~ 1011615 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU268
GCCACGCTCCAGTCGAGAcaagtctctgtttctctctgaaagaaaagtcaaactgacttcatcaggtctttctcaacaacacagcagagtctctgccaaacactgATATGGCTGCTGCAAACTATCTGTCATctgaagatcagtttctgtgctccatctgtctggatgtgtttACTGATCCTGTCACCACACCATGTGGACACAACTTCTGCAAAAACTGCATCACTGATCACTGGAATATTAGTGACCGGTGCCAGTGTCCCTTATGTAAAGAGGCCTTTACCACCAGACCTGATTTGAGGGTCAACACTTTCATCTCTGAGATGGTTGCTCAGTTCAGACAGTCAGCTCAACAGAAAGCCAGaagcagcagctcagagcaacaagTGGCCAAACCAGGAAAAGTTCCCTGTGACGTCTGCactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtctcctactgtgagactcacctggagcctcatctgaCCATGTCAGGtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGAATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccgaccagacatgtgtctgcatgctctgcACTGTTTTAGATCACAAGA
>XM_039812853.1
GCCACGCTGCAGTAGAGAcaagtctctgtttctctctgaaagaaaactcaaactgactTCATCAGGTCTTTCTCAACAACACAGCAGAGTCTCTGCCAAACACTGATATGGCTGCTGCAAACTATCTGTCATctgaagatcagtttctgtgctccatctgtctggatgtgtttACTGATCCTGTCACCACACCATGTGGACACAACTTCTGCAAAAACTGCATCACTGATCACTGGAATATTAGTGACCGGTGCCAGTGTCCCTTATGTAAAGAGGCCTTTACCACCAGACCTGATTTGAGGGTCAACACTTTCATCTCTGAGATGGTTGCTCAGTTCAGACAGTCAGCTCAACAGAAAGCCAGaagcagcagctcagagcaacaagTGGCCAAACCAGGAAAAGTTCCCTGTGACGTCTGCactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtctcctactgtgagactcacctggagcctcatctgaCCATGTCAGGtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGAATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccgaccagacatgtgtctgcatgctctgcACTGTTTTAGATCACAAGACGCATGATGTTGTTCCTCTGAAAGAAGAATGTGAAGGAAAGAAGGCCAAGCTGGGGAAGACAGAGGCTGaaattcagaagatgatccagaagagacgactgaagattcaggaaatcaaacactcagtcgacctcagtgaggaagatgcagacagagagatagcagaaggtgttcgggtcttcacttctctgaaggagtctgttgaGAGAGGCCTGAATGAGCTCATCGACACGatcaaaaagaagcagaaaataacagaaaaacaggttgaagctttcatcaaagagctggaacaggaaatctctgagctgatgaagaggagcactgaggtggagcagctctcacgctctgaagaccacctccatcttctccagagtGTCCAGTCCCTAAACATCCAAAAACCTCCACCCAACAAGGACTGGACAAAGGTCAGCGTCCATCCATCATCATATGAGGGGACTGTGGTGAAAGCTGTGGCtcagctggaggagacactcagtaaagagatgaagaagctgctccCTGAGtctgagctgaagagggtccagcagtatgcagtggatgtgactcttGATCGTGAGACAGCACATCCTCAACTCATCCTGTCTGATGGTTGGAAACAAGTGAATCTTGGTGAAGTGGAGAAGAATCTCCCAAACAACCGAAAGAGATTTtctaagtgtgtttgtgttttaggaAAACAGAGTTTCTCTTCAGGCAGATTTTACTTTGAGGTTCAAGTTAAAGGAAAGACTGAATGGGATTTAGGAGTGGCCAGAGAGTCGATCAACAGAAAGCACATCACACTGAGCCCTCAGAATGGTTACTGGACTATATGGTTGAGAAAGAGAAATCAGTACGAAGCTCTTGATGACCCTTCAGTCCGTCTCTCTCTGAAGTCTCGGcctcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgatgtagatgctgcagctcttatctactcctttactggctgctccttcactgagaaactcttaCCATACTTCTTTACTGGTGATATTTATGGCCGTAAAAACTCTGCCCCTCTGATCATCACTCCTGTCAGAGTAAactaatcagaatcagaatactttattgatcccctcaaggaaattgttagttgcagttgctcacagtcatGGTAAAaaataagagtaaaaaaaaaagataatcgATAAGTGTATAAAATAGCATAGGTACATTGCAAGAAATAAAAAGTTAAGCAGAAGTAAAATGAGATTATGTTAAAAAGTAAGATTAGGTCAAAAACGGGACTGTAAACAGGATTTTAGCATTACAGAGGTccaaatttagtttttatttcccTGACCTAAATATGCGCATTCTAAGACATTTGGAGAGCAACTATTGTATAACAGTAGCTTCAAAATCCTGGGGGGGACAGTAAGAATTCCGCACCTTCCTTTTTCTTTCGGTCTCATCATAATCTTGTTCATCTCGTCCCTTCCCATAGGATAGCTTTGTCTGAAGTACTCTCTTCATTTTAGTTTGTCTCAGTgaagaaattaaacaatacagaGGAGATCCGGACCTCGGTATCCCTTAATGGTAGATACAGCCATGGTTGAAAAGATTCTGTTGCTAAAACAATAGATTGTACAAATGCTATTGAAGTACAGTGTAAACATAGAGTACAGTATAAACATGAAGTACAGCGTGAACTTAAGTGGCAGcagtgaataaataacagatatTGCACATAactattgtaattgtaattattGCAAATAGTTGTCCAAGAATATTGAGATTCAGATGTAGACATGCGTGTTATGAGTCCAGTTTTGACATTGCAAGTGTGTAACACTTGAGGAGGAGTTCTATAGTTTGATATCCA
>XM_039812862.1
ACGTCACACTCCAGAAATGAAAGTTAAGTTTGTCAGAGTGTCAGCCACGCTCCAGTCGAGAcaagtctctgtttctctctgaaagaaaagtcaaactgacttcatcaggtctttctcaacaacacagcagagtctctgccaaacactgATATGGCTGCTGCAAACTATCTGTCATctgaagatcagtttctgtgctccatctgtctggatgtgtttACTGATCCTGTCACCACACCATGTGGACACAACTTCTGCAAAAACTGCATCACTGATCACTGGAATATTAGTGACCGGTGCCAGTGTCCCTTATGTAAAGAGGCCTTTACCACCAGACCTGATTTGAGGGTCAACACTTTCATCTCTGAGATGGTTGCTCAGTTCAGACAGTCAGCTCAACAGAAAGCCAGaagcagcagctcagagcaacaagTGGCCAAACCAGGAAAAGTTCCCTGTGACGTCTGCactggaaccaaactgaaggccctgaagtcctgcctggtgtgtctggtctcctactgtgagactcacctggagcctcatctgaCCATGTCAGGtctgaaaagacatcagctgatcgACCCTGTGGAGAACCTGGAAGGCAGAATGTGTACGAAGCACGATAAAcctctggagctgttctgtaagaccgaccagacatgtgtctgcatgctctgcACTGTTTTAGATCACAAGACGCATGATGTTGTTCCTCTGAAAGAAGAATGTGAAGGAAAGAAGGCCAAGCTGGGGAAGACAGAGGCTGaaattcagaagatgatccagaagagacgactgaagattcaggaaatcaaacactcagtcgacctcagtgaggaagatgcagacagagagatagcagaaggtgttcgggtcttcacttctctgaaggagtctgttgaGAGAGGCCTGAATGAGCTCATCGACACGatcaaaaagaagcagaaaataacagaaaaacaggttgaagctttcatcaaagagctggaacaggaaatctctgagctgatgaagaggagcactgaggtggagcagctctcacgctctgaagaccacctccatcttctccagagtGTCCAGTCCCTAAACATCCAAAAACCTCCACCCAACAAGGACTGGACAAAGGTCAGCGTCCATCCATCATCATATGAGGGGACTGTGGTGAAAGCTGTGGCtcagctggaggagacactcagtaaagagatgaagaagctgctccCTGAGtctgagctgaagagggtccagcagtatgcagtggatgtgactcttGATCGTGAGACAGCACATCCTCAACTCATCCTGTCTGATGGTTGGAAACAAGTGAATCTTGGTGAAGTGGAGAAGAATCTCCCAAACAACCGAAAGAGATTTtctaagtgtgtttgtgttttaggaAAACAGAGTTTCTCTTCAGGCAGATTTTACTTTGAGGTTCAAGTTAAAGGAAAGACTGAATGGGATTTAGGAGTGGCCAGAGAGTCGATCAACAGAAAGCACATCACACTGAGCCCTCAGAATGGTTACTGGACTATATGGTTGAGAAAGAGAAATCAGTACGAAGCTCTTGATGACCCTTCAGTCCGTCTCTCTCTGAAGTCTCGGcctcagaaggtgggggtgtttgtggattatgaggagggtctggtctccttttatgatgtagatgctgcagctcttatctactcctttactggctgctccttcactgagaaactcttaCCATACTTCTTTACTGGTGATATTTATGGCCGTAAAAACTCTGCCCCTCTGATCATCACTCCTGTCAGAGTAAactaatcagaatcagaatactttattgatcccctcaaggaaattgttagttgcagttgctcacagtcatGGTAAAaaataagagtaaaaaaaaaagataatcgATAAGTGTATAAAATAGCATAGGTACATTGCAAGAAATAAAAAGTTAAGCAGAAGTAAAATGAGATTATGTTAAAAAGTAAGATTAGGTCAAAAACGGGACTGTAAACAGGATTTTAGCATTACAGAGGTccaaatttagtttttatttcccTGACCTAAATATGCGCATTCTAAGACATTTGGAGAGCAACTATTGTATAACAGTAGCTTCAAAATCCTGGGGGGGACAGTAAGAATTCCGCACCTTCCTTTTTCTTTCGGTCTCATCATAATCTTGTTCATCTCGTCCCTTCCCATAGGATAGCTTTGTCTGAAGTACTCTCTTCATTTTAGTTTGTCTCAGTgaagaaattaaacaatacagaGGAGATCCGGACCTCGGTATCCCTTAATGGTAGATACAGCCATGGTTGAAAAGATTCTGTTGCTAAAACAATAGATTGTACAAATGCTATTGAAGTACAGTGTAAACATAGAGTACAGTATAAACATGAAGTACAGCGTGAACTTAAGTGGCAGcagtgaataaataacagatatTGCACATAactattgtaattgtaattattGCAAATAGTTGTCCAAGAATATTGAGATTCAGATGTAGACATGCGTGTTATGAGTCCAGTTTTGACATTGCAAGTGTGTAACACTTGAGGAGGAGTTCTATAGTTTGATATCCA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268 False 654 TUCP 0.51 2 1002426 1009733
XM_039812853.1 False 2536 mRNA 0.43 2 926306 1011615
XM_039812862.1 True 2579 mRNA 0.43 2 1002383 1011615

Neighbor

gene id symbol gene type direction distance location
LOC120566870 NA coding upstream 67773 840662 ~ 858533 (+)
LOC120566667 NA coding upstream 119263 632750 ~ 807043 (+)
LOC120566718 NA coding upstream 134401 788102 ~ 791905 (+)
LOC120566682 NA coding upstream 152581 756425 ~ 773725 (+)
LOC120566650 NA coding upstream 208635 712986 ~ 717671 (+)
LOC120566725 NA coding downstream 55083 1066698 ~ 1072641 (+)
LOC120566475 NA coding downstream 81404 1093019 ~ 1103529 (+)
LOC120566383 NA coding downstream 126463 1138078 ~ 1171265 (+)
LOC120566742 NA coding downstream 137391 1149006 ~ 1150498 (+)
LOC120560623 LOC104959125,LOC102294989,LOC102198497,LOC101481490 coding downstream 195303 1206918 ~ 1215606 (+)
LOC120566926 NA non-coding upstream 34183 891621 ~ 892123 (+)
G270 LOC103372508 non-coding upstream 114359 808561 ~ 811947 (+)
G261 NA non-coding upstream 234077 686445 ~ 692229 (+)
G221 NA non-coding upstream 403317 522532 ~ 522989 (+)
G55 NA non-coding upstream 515844 409741 ~ 410462 (+)
LOC120566887 NA non-coding downstream 291098 1302713 ~ 1303535 (+)
G309 NA non-coding downstream 339905 1351520 ~ 1352050 (+)
G310 NA non-coding downstream 342521 1354136 ~ 1354378 (+)
G321 LOC106675347,LOC106676307,LOC106676577,LOC107663003,LOC107395936,LOC107379945 non-coding downstream 371515 1383130 ~ 1383452 (+)
G322 NA non-coding downstream 372842 1384457 ~ 1384658 (+)
LOC120566394 NA other upstream 172544 708153 ~ 753762 (+)
G176 LOC104946033 other upstream 328099 583390 ~ 598207 (+)
G184 NA other upstream 444416 477971 ~ 481890 (+)
rrp36 rrp36 other upstream 605527 291233 ~ 320779 (+)
LOC120560073 LOC103372506,LOC102203670,LOC101482513,LOC102296948 other upstream 701710 200413 ~ 224596 (+)
G199 NA other downstream 5292 1016907 ~ 1019038 (+)
G292 NA other downstream 105009 1116624 ~ 1144413 (+)
G165 NA other downstream 133039 1144654 ~ 1158559 (+)
G151 NA other downstream 182046 1193661 ~ 1219085 (+)
G149 LOC104959125,LOC105030654 other downstream 300252 1311867 ~ 1312431 (+)

Expression


Co-expression Network