G1932


Basic Information

Item Value
gene id G1932
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6366489 ~ 6466386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU2704
cattcagcgtgaaaacagcatcagacatgactaatgtactaaagagatctaagttgactaagaccaaaaccaccgattagtcgactaatcgactaaagagggagcagccctacataTTTGTGTCACTAAATCAGCTGTTCACACAGGcgtgtccaacttctatctgtggacatgttgttacgctgtttgcacAATGCGTCGTTATCAACCGGTATCgctaacaatagctaaccgGGCTAGAGCTATAAcgaaaaacaatgaaaatcagaCTTTTAAATAGGACGCGTTCAACTTGggtatgacgtcattcccagttcTAGGGTTGCTCCCTCTTagccgattagtcgactaatcggtggttttggtcttagtcgacttagacaaaaaaaacctggaaagaaatcaacaaaaacattttttgtatttattttttccagctattttttttaaaatgtttttgtcaatttatttttttttttttcactatttgaagtttttgtcgatttttttttcagaaaaaaaaaaataaataaaaaaaaaaatatgtttttgttgttgatttctttccaggttttttttgtcactatttccaCCTTTTATCTCATCCTCTCAAACGTTCCTCCGCCACATTTCACTGCACATATTAAAAGTATGAGTATGTgatagggctgctccctcttagccgattagtcgactaatcggttattttggtcttagtcaacttagatttctttagtccattagtca
>TU2706
tttttttttaaaaaaaaaaaaataaataaaaaaaaaaatatgtttttgttgttgatttctttccaggttttttttgtcactattttcagtgattttttttaacatgtttttgtcaatttttttccaAGGGTTTTTGTAACaatttgacgtttttgtcaattttttttcagagatttaaaaaaaagaagctatattttaaaatgtttttgtcgattgttttcagtgattttttttttttttttaaacattttgttgatttctttccaggttttttttgtcactatttccaCCTTTTATCTCATCCTCTCAAACGTTCCTCCGCCACATTTCACTGCACATATTAAAAGTATGAGTATGTgatagggctgctccctcttagccgattagtcgactaatcggttattttggtcttagtcaacttagatttctttagtccattagtca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2704 True 747 lncRNA 0.32 2 6465439 6466386
TU2706 False 444 lncRNA 0.46 2 6366489 6466386

Neighbor

gene id symbol gene type direction distance location
ppp3r1b PPP3R1,ppp3r1,ppp3r1b,LOC101071292,LOC108441257,LOC107727894,LOC106024317,LOC107699153,LOC107594412,LOC107680167 coding upstream 133890 6163406 ~ 6232599 (+)
cnrip1a cnrip1,LOC102194292,LOC107094923,LOC101465016,LOC100711692,LOC106535151,LOC104918542 coding upstream 209098 6148380 ~ 6157391 (+)
LOC120563935 NA coding upstream 220462 6132635 ~ 6146027 (+)
LOC120563973 NA coding upstream 239046 6120394 ~ 6127443 (+)
LOC120563868 NA coding upstream 257049 6105145 ~ 6109440 (+)
LOC120565047 actr2,actr2a,LOC107583198,LOC104930021,LOC108423375 coding downstream 43839 6510225 ~ 6528948 (+)
LOC120568096 LOC104918539,LOC100694188,LOC102198854,LOC101483894 coding downstream 125050 6591436 ~ 6659319 (+)
LOC120564833 mdha,mdh1,LOC107382285,LOC106536176 coding downstream 229198 6695584 ~ 6722958 (+)
LOC120564849 ugp2,LOC100710204,LOC101487688 coding downstream 261542 6727928 ~ 6763797 (+)
LOC120569765 NA coding downstream 331080 6797466 ~ 6797580 (+)
G1941 NA non-coding upstream 16907 6348780 ~ 6349582 (+)
G1927 NA non-coding upstream 49757 6275673 ~ 6316732 (+)
G1915 NA non-coding upstream 78320 6234343 ~ 6288169 (+)
G1983 NA non-coding downstream 91220 6557606 ~ 6557845 (+)
G2230 NA non-coding downstream 115739 6582125 ~ 6582434 (+)
G2241 NA non-coding downstream 165287 6631673 ~ 6632069 (+)
G2257 NA non-coding downstream 225755 6692141 ~ 6692371 (+)
G2258 NA non-coding downstream 227526 6693912 ~ 6694211 (+)
snrpb2 snrpb2 other upstream 450115 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 895080 5387393 ~ 5471409 (+)
G1775 NA other upstream 991582 5372617 ~ 5374907 (+)
LOC120563544 LOC100708833,LOC102313704,LOC101466655,LOC102192550 other upstream 1038572 5235346 ~ 5327917 (+)
G1756 NA other upstream 1143745 5218068 ~ 5222744 (+)
G1973 NA other downstream 66055 6532441 ~ 6534370 (+)
G2530 NA other downstream 1232879 7699265 ~ 7699540 (+)
G2557 NA other downstream 1475161 7941547 ~ 7948253 (+)
G2590 NA other downstream 1623427 8089813 ~ 8091505 (+)
LOC120565323 NA other downstream 1935329 8401715 ~ 8415076 (+)

Expression


Co-expression Network