LOC120563672 (esf1,LOC108229506)


Basic Information

Item Value
gene id LOC120563672
gene name esf1,LOC108229506
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 5476545 ~ 5499993 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU2877
ACGGAAGCGCTGCATGCTGGGAAAACACGTGTAGCAGAAGACCAGAGAGTAAAGGCTCTGAATCCTTCCTCCAGCGCTGATACGGCGCCGCGTCCCGCTGTGTCTTTCAGGCGACACGTCAACAGTTTTTTCCCCCCGCCACCATGTCGTCCAAAAAGCGTGCGGAGGGCGACGAGCGGTTCCAGCGGGTGCAGAAGGACCCCCGGTTCTGGGAGATGCCCGAGAGGGACCGCAAGGTCACGATCGACAAGCGCTTCCAGTCCATGTTCCACGACAAGCGCTTCAAGGAGAAGTACACGGTGGACAAGAGGGGCCGGCCCGTCAACCAGACCTCCACCGAGGACCTGAAGCGCTTCTACCAGCTCTCGGACGACGAGGACGAGGAGGACGAGGAGACAAAGAAGGAAGCGGCAGAGggcaagagaaagaagaaagtgaaGGAGAAGCTGGGGAAGGCTgatgaagaggagaagaaagggaAAGCGGCGCCGAGCAAAGGCGGGAAAGGAGAGCAGCCAGAACGTGTCGTCCGAGTTGTTGTAGAGGGAGACGCCGAGGACGACGCCGAGCAGCAAACTGCGGAGAGGGACGATGTTGACCTGGGAGACAGGGTCGCGGTCAGCAGTGGGGAGGACGAAgacgacgatgatgatgatgatgatgatgatgaagaagaggagagcGATGTGGCGAGCGGATCCGGCGCGGAGGAGTCCGGTCTAGATtcggaggaggaggacagcGACAGCGAGCCAGATCTGGCCAGGGGGAAGGGAAACGTGGAGACGAGCTCGGACGAAGATGACGAAGACGACGATGTGGACGCCATCctgaggaaggaggaagaggagatcGAGCACGACTGGGGCGG
>TU2878
ACGGAAGCGCTGCATGCTGGGAAAACACGTGTAGCAGAAGACCAGAGAGGCTCTGAATCCTTCCTCCAGCGCTGATACGGCGCCGCGTCCCGCTGTGTCTTTCAGGCGACACGTCAACAGTTTTTTCCCCCCGCCACCATGTCGTCCAAAAAGCGTGCGGAGGGCGACGAGCGGTTCCAGCGGGTGCAGAAGGACCCCCGGTTCTGGGAGATGCCCGAGAGGGACCGCAAGGTCACGATCGACAAGCGCTTCCAGTCCATGTTCCACGACAAGCGCTTCAAGGAGAAGTACACGGTGGACAAGAGGGGCCGGCCCGTCAACCAGACCTCCACCGAGGACCTGAAGCGCTTCTACCAGCTCTCGGACGACGAGGACGAGGAGGACGAGGAGACAAAGAAGGAAGCGGCAGAGggcaagagaaagaagaaagtgaaGGAGAAGCTGGGGAAGGCTgatgaagaggagaagaaagggaAAGCGGCGCCGAGCAAAGGCGGGAAAGGAGAGCAGCCAGAACGTGTCGTCCGAGTTGTTGTAGAGGGAGACGCCGAGGACGACGCCGAGCAGCAAACTGCGGAGAGGGACGATGTTGACCTGGGAGACAGGGTCGCGGTCAGCAGTGGGGAGGACGAAgacgacgatgatgatgatgatgatgatgatgaagaagaggagagcGATGTGGCGAGCGGATCCGGCGCGGAGGAGTCCGGTCTAGATtcggaggaggaggacagcGACAGCGAGCCAGATCTGGCCAGGGGGAAGGGAAACGTGGAGACGAGCTCGGACGAAGATGACGAAGACGACGATGTGGACGCCATCctgaggaaggaggaagaggagatcGAGCACGACTGGGGCGG
>TU2879
ACGGAAGCGCTGCATGCTGGGAAAACACGTGTAGCAGAAGACCAGAGAGGCGACACGTCAACAGTTTTTTCCCCCCGCCACCATGTCGTCCAAAAAGCGTGCGGAGGGCGACGAGCGGTTCCAGCGGGTGCAGAAGGACCCCCGGTTCTGGGAGATGCCCGAGAGGGACCGCAAGGTCACGATCGACAAGCGCTTCCAGTCCATGTTCCACGACAAGCGCTTCAAGGAGAAGTACACGGTGGACAAGAGGGGCCGGCCCGTCAACCAGACCTCCACCGAGGACCTGAAGCGCTTCTACCAGCTCTCGGACGACGAGGACGAGGAGGACGAGGAGACAAAGAAGGAAGCGGCAGAGggcaagagaaagaagaaagtgaaGGAGAAGCTGGGGAAGGCTgatgaagaggagaagaaagggaAAGCGGCGCCGAGCAAAGGCGGGAAAGGAGAGCAGCCAGAACGTGTCGTCCGAGTTGTTGTAGAGGGAGACGCCGAGGACGACGCCGAGCAGCAAACTGCGGAGAGGGACGATGTTGACCTGGGAGACAGGGTCGCGGTCAGCAGTGGGGAGGACGAAgacgacgatgatgatgatgatgatgatgatgaagaagaggagagcGATGTGGCGAGCGGATCCGGCGCGGAGGAGTCCGGTCTAGATtcggaggaggaggacagcGACAGCGAGCCAGATCTGGCCAGGGGGAAGGGAAACGTGGAGACGAGCTCGGACGAAGATGACGAAGACGACGATGTGGACGCCATCctgaggaaggaggaagaggagatcGAGCACGACTGGGGCGG
>XM_039808022.1
GTTTGTCCCACTTCGCTTGCCTTCCCCAGAAAGGGGCGGGAACGTTGGAACGGTCACGGAAGCGCTGCATGCTGGGAAAACACGTGTAGCAGAAGACCAGAGAGGCTCTGAATCCTTCCTCCAGCGCTGATACGGCGCCGCGTCCCGCTGTGTCTTTCAGGCGACACGTCAACAGTTTTTTCCCCCCGCCACCATGTCGTCCAAAAAGCGTGCGGAGGGCGACGAGCGGTTCCAGCGGGTGCAGAAGGACCCCCGGTTCTGGGAGATGCCCGAGAGGGACCGCAAGGTCACGATCGACAAGCGCTTCCAGTCCATGTTCCACGACAAGCGCTTCAAGGAGAAGTACACGGTGGACAAGAGGGGCCGGCCCGTCAACCAGACCTCCACCGAGGACCTGAAGCGCTTCTACCAGCTCTCGGACGACGAGGACGAGGAGGACGAGGAGACAAAGAAGGAAGCGGCAGAGggcaagagaaagaagaaagtgaaGGAGAAGCTGGGGAAGGCTgatgaagaggagaagaaagggaAAGCGGCGCCGAGCAAAGGCGGGAAAGGAGAGCAGCCAGAACGTGTCGTCCGAGTTGTTGTAGAGGGAGACGCCGAGGACGACGCCGAGCAGCAAACTGCGGAGAGGGACGATGTTGACCTGGGAGACAGGGTCGCGGTCAGCAGTGGGGAGGACGAAgacgacgatgatgatgatgatgatgatgatgaagaagaggagagcGATGTGGCGAGCGGATCCGGCGCGGAGGAGTCCGGTCTAGATtcggaggaggaggacagcGACAGCGAGCCAGATCTGGCCAGGGGGAAGGGAAACGTGGAGACGAGCTCGGACGAAGATGACGAAGACGACGATGTGGACGCCATCctgaggaaggaggaagaggagatcGAGCACGACTGGGGCGGTGGGAAAAGCGCCGCGCCAAGCGCGAGGgtctCAACCCGACTGGCCGTCTGCAACATGGACTGGGACCGGATGAAAGCCAAAGACCTGCTGGCTCTGTTCAACTCCTTCGTGCCTAAAGGAGGAGCTGTGCTGTCTGTCAAGATCTACCCGTCAGAGTTTGGGAAGGAGAGGCTGAAGGCGGAGCAGACCAAGGGACCGCTGGAGCTGAGAGCTCTGCCCGACGACTCGGAGGACGACACCGAGGAGGAGAAaggCTACAGAGAGAGGATGCGTGACTACCAGTTCAAGCGGCTGAAGTACTTCTACGCCGTGGTGGAGTGCGACTCGGCCGACACCGCCGCCAAGATCTACCAGGAGTGTGACGGCTTCGAGTACGAGAGCAGCTGCTCCGTCCTGGACCTCCGGTTTATCCCGGACGACGTCGAGTTCGAAGAGGAGCCAAAAGACGCGGCCACGGACGTGAATCTCTCCGACTACACGCCCAAACTGTTCACCTCGGCCGCCAACGCAACATCAAAGGTGCAGCTGACGTGGGACGAGACGGACAACGAGCGCGTGACCGCCCTGAACAGGAACTTCAACAAGGACGAGCTGCTGGCCATGGACTTCAATGCCTACCTGGCCTCCTCCagcgaagaagaagaggaggagggtgagGAAGGAAGGTTCGAGTTCGGAGAGCCACAGAGTGGAGAGGAAGACTCAACAGCAGAGGctaAACGTCCGGCTGAGTCGGTCGTCGTGGAGGCGGAGAAGAGACcccagaaggaggaggaggaagagaagagaagtaaaaagaagaaaagcgaGGAGCAGATCTCAAAGTACAGAGAGCTGCTGAAAGGGATCCGGGACAAAGAGACGAAGCTGCACGAGGACAGAGACATGGAGATGGAGGTCACCTGGGTGCCAGGGCTGAAGGAGACGACGGAGCAGCTGGTGAAGAAGAAGCTGGAGGGCAAGGACAAGCTGACGCCCTGGGAGGACTTCTTGCAGAAGAAGAAGGACCGGAAGAAGCAGAAGAAATCGCAAAGAAAAGAGGGAGAGGATGAGGAAGATCTCAGCGAAGACGAGCTTCCTCCGGACGTGGACCTCAGTGACCCCTTCTTCGCCGAGGAGCTCGCCGCCACAGACGTTCAGAAGAAATCAAAGggggggaagaagaagaagaagaagcaggaggaagaggagcggacagccgaggaggaagaggagctggAGAAACAGAAGGTGAGAGTTGTGGAGACCTGTGGATCAGAGCGTTAGCTACATGCTACatgc

Function

symbol description
esf1 Predicted to enable RNA binding activity. Acts upstream of or within neural crest cell development; pharyngeal system development; and rRNA processing. Predicted to be located in nucleolus. Is expressed in several structures, including digestive system; head; immature eye; midbrain neural rod; and pectoral fin bud. Orthologous to human ESF1 (ESF1 nucleolar pre-rRNA processing protein homolog).

NR:

description
PREDICTED: ESF1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2877 False 871 TUCP 0.42 3 5496038 5499938
TU2878 False 866 TUCP 0.38 3 5496038 5499938
TU2879 False 810 TUCP 0.51 3 5496038 5499938
XM_039808022.1 True 2203 mRNA 0.59 12 5476545 5499993

Neighbor

gene id symbol gene type direction distance location
LOC120563643 NA coding downstream 4540 5471446 ~ 5472005 (-)
LOC120563585 NA coding downstream 5219 5470063 ~ 5471326 (-)
LOC120563624 NA coding downstream 69364 5401561 ~ 5407181 (-)
LOC120563650 NA coding downstream 200849 5243915 ~ 5275696 (-)
LOC120563200 LOC103374761 coding downstream 410355 5037606 ~ 5066190 (-)
kif16ba kif16b coding upstream 313372 5813365 ~ 5874875 (-)
LOC120563808 NA coding upstream 387476 5887469 ~ 5892793 (-)
LOC120564640 NA coding upstream 399563 5899556 ~ 5905631 (-)
LOC120563798 NA coding upstream 439853 5939846 ~ 5944002 (-)
LOC120563920 NA coding upstream 459334 5959327 ~ 5964163 (-)
G2056 NA non-coding downstream 17472 5458781 ~ 5459073 (-)
G2047 NA non-coding downstream 60657 5415336 ~ 5415888 (-)
G2034 NA non-coding downstream 98759 5375492 ~ 5377786 (-)
G2009 NA non-coding downstream 130223 5320067 ~ 5346322 (-)
G2022 NA non-coding downstream 135038 5340534 ~ 5341507 (-)
G2064 NA non-coding upstream 2060 5502053 ~ 5507095 (-)
G2070 NA non-coding upstream 75859 5575852 ~ 5624485 (-)
G2076 NA non-coding upstream 189970 5689963 ~ 5692475 (-)
LOC120563981 NA non-coding upstream 293622 5793615 ~ 5795764 (-)
G2105 NA non-coding upstream 302857 5802850 ~ 5807849 (-)
G2010 NA other downstream 123393 5231497 ~ 5353152 (-)
LOC120563591 LOC107656489 other downstream 326126 5148516 ~ 5150419 (-)
LOC120564103 NA other downstream 341240 5114020 ~ 5135305 (-)
G1726 NA other downstream 378911 5097369 ~ 5097634 (-)
G1722 hnrnpll,LOC108249392,LOC104956991,LOC106530872,LOC103368822 other downstream 391027 5076606 ~ 5085518 (-)
LOC120563692 NA other upstream 231446 5731439 ~ 5736986 (-)
G2146 NA other upstream 611146 6111139 ~ 6111592 (-)
LOC120563747 LOC104946033 other upstream 700954 6200947 ~ 6206890 (-)
G2177 NA other upstream 766613 6266606 ~ 6267238 (-)
G2219 NA other upstream 1021513 6521506 ~ 6534443 (-)

Expression


Co-expression Network