G2219


Basic Information

Item Value
gene id G2219
gene name NA
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6521506 ~ 6534443 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU3116
ATGTTTGTCAAGAGGaaattatacatttatatttatatatttatatatatatgtgtgtgagcCAAGATGCCTCCAATATACATATAAGAACCGAGACGGAAAACCACAAATACCAGCTTTTTACGTGGCCTCCATTTCCTGACAACCCGGATCTTATTAATCatattacaaattacatttcagTAACCCACACAGAAATCACCTTCTCCTGTAACCCCCAAAAACCCCACAAATTCATCTTCGGTAGAGCCGAGAccgagaaggagaaggagagagacagaggtgtGGATACGAGGAGAAAGAAAACTGGAAGAATGGAAAAAGACGGACTTGAAATGTCCCCCTCACACACTGCATCGGTGCAGATTCAGTGTTTAAGATGCACAAACATCCCACAGCGATCTCATTGGCTGAACAGCTGAGGCTTGTTTTTACAGCTATTAACCTTTACCAAAAGTTGGTTTGTGTCTTTTCTAGGGATGCACccaatccaggattcggctgaatatttgggctttttgacaggattctggtttctgccgaaccgtAGAATTTTTTCCcagcgaaccgaaccctacgcttgcactaggCGCGCTATGCTGGTCGCCGTAGTGACGGTGCCggtgattacgggaaggtgtttacgtaggtggagcgttcaatgcagcaggctgtgaggaaatggacatggatctggtgagcagcaggctgtgagaaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagcaggctgtgaggaagtggacatggatctggtgagcagcaggctgtgaggaagtggacatggatctggtgagcagtaggctgtgaagaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatcaggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagcaggctgtgaggaagtggacatggatctggtgagcagtaggctgtgaagaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatcaggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagaacaagttattgtttggcagtactttcagtcaaaagaaggccattcaagtccagctacatgttcaatctgttcaatgctgattggtttggtggtggcgaggaccctaaactatacacaacatggccgctgttacatctggtctgaaacatctgaaagaatacgagttgtgcatgaaggaatctccagacagcagccagaatgcagcaacttcaggtacggcaaaggaaggacagtccctgtttacttcattcatgtgtttactgggttcatggactgaggatgggaggaggagtcagcacaatctcaaccagAGGATTCGGTATTTGGCCGAAATCCccaaaatctggattcggtgcatcccatTTCCCAAAAGATCGTTTGTGTCTTTTCAGGTAGTTCTGATTTACACGTTTTGTTCAAGTGTTTGATTTGTATTAGTTACCTAATGCTATAAAAATGGGGCTAAAATGTCACGATTGACAGTTTGCGATTGgtgtatatacatacactaccggtcaaaagtttggggtcacttacaaatttccattccacccagaatgtcaaagtatatgggagctgtaccacttttaattttgGTACgacgtttagaccaaaaagcatggaTTTCAAGCGTTTCTtgaacagtcgagaacccttttgcaattatgtaagcacataatgtaatctgaaaactgctgccctggttaaaaacacaatgcaactgatctcagctggtattctgtctgtaatggacaTTTCTAAGTTATCCCAAacttttacatacatacatacatacatacatacatacatacatacatacatacatacagtacaggccaaaagtttggacacaccttctcattcaatgtgtttcctttttattttcatgactatttacattgtagattctcactgaaggcatcaaaactatgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttatattttagattcttcaaagtagccaccctttgctttttttgataactctgcaaacccttggtgttctctcaatgagcttcatgaggtagtcacctgaaatggttttaccttcacaggtgtgctttgtcagggttcattagtg
>TU3119
ATGTTTGTCAAGAGGaaattatacatttatatttatatatttatatatatatgtgtgtgagcCAAGATGCCTCCAATATACATATAAGAACCGAGACGGAAAACCACAAATACCAGCTTTTTACGTGGCCTCCATTTCCTGACAACCCGGATCTTATTAATCatattacaaattacatttcagTAACCCACACAGAAATCACCTTCTCCTGTAACCCCCAAAAACCCCACAAATTCATCTTCGGTAGAGCCGAGAccgagaaggagaaggagagagacagaggtgtGGATACGAGGAGAAAGAAAACTGGAAGAATGGAAAAAGACGGACTTGAAATGTCCCCCTCACACACTGCATCGGTGCAGATTCAGTGTTTAAGATGCACAAACATCCCACAGCGATCTCATTGGCTGAACAGCTGAGGCTTGTTTTTACAGCTATTAACCTTTACCAAAAGTTGGTTTGTGTCTTTTCTAGGGATGCACccaatccaggattcggctgaatatttgggctttttgacaggattctggtttctgccgaaccgtAGAATTTTTTCCcagcgaaccgaaccctacgcttgcactaggCGCGCTATGCTGGTCGCCGTAGTGACGGTGCCggtgattacgggaaggtgtttacgtaggtggagcgttcaatgcagcaggctgtgaggaaatggacatggatctggtgagcagcaggctgtgagaaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagcaggctgtgaggaagtggacatggatctggtgagcagcaggctgtgaggaagtggacatggatctggtgagcagtaggctgtgaagaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatcaggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagaacaagttattgtttggcagtactttcagtcaaaagaaggccattcaagtccagctacatgttcaatctgttcaatgctgattggtttggtggtggcgaggaccctaaactatacacaacatggccgctgttacatctggtctgaaacatctgaaagaatacgagttgtgcatgaaggaatctccagacagcagccagaatgcagcaacttcaggtacggcaaaggaaggacagtccctgtttacttcattcatgtgtttactgggttcatggactgaggatgggaggaggagtcagcacaatctcaaccagAGGATTCGGTATTTGGCCGAAATCCccaaaatctggattcggtgcatcccatTTCCCAAAAGATCGTTTGTGTCTTTTCAGGTAGTTCTGATTTACACGTTTTGTTCAAGTGTTTGATTTGTATTAGTTACCTAATGCTATAAAAATGGGGCTAAAATGTCACGATTGACAGTTTGCGATTGgtgtatatacatacactaccggtcaaaagtttggggtcacttacaaatttccattccacccagaatgtcaaagtatatgggagctgtaccacttttaattttgGTACgacgtttagaccaaaaagcatggaTTTCAAGCGTTTCTtgaacagtcgagaacccttttgcaattatgtaagcacataatgtaatctgaaaactgctgccctggttaaaaacacaatgcaactgatctcagctggtattctgtctgtaatggacaTTTCTAAGTTATCCCAAacttttacatacatacatacatacatacatacatacatacatacatacatacatacagtacaggccaaaagtttggacacaccttctcattcaatgtgtttcctttttattttcatgactatttacattgtagattctcactgaaggcatcaaaactatgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttatattttagattcttcaaagtagccaccctttgctttttttgataactctgcaaacccttggtgttctctcaatgagcttcatgaggtagtcacctgaaatggttttaccttcacaggtgtgctttgtcagggttcattagtg
>TU3121
CGTCTAGAAATCACTTTGCTTTATTTAAAATCAGCGGTTGGCAGTTATGCTATCAACAAATATCATAAAAAGGACGACCCAAAAAATAATACCCAGCAAGAATAACTACTAGCATTTGGCACTTGATGACCATGTTTGTCAAGAGGaaattatacatttatatttatatatttatatatatatgtgtgtgagcCAAGATGCCTCCAATATACATATAAGAACCGAGACGGAAAACCACAAATACCAGCTTTTTACGTGGCCTCCATTTCCTGACAACCCGGATCTTATTAATCatattacaaattacatttcagTAACCCACACAGAAATCACCTTCTCCTGTAACCCCCAAAAACCCCACAAATTCATCTTCGGTAGAGCCGAGAccgagaaggagaaggagagagacagaggtgtGGATACGAGGAGAAAGAAAACTGGAAGAATGGAAAAAGACGGACTTGAAATGTCCCCCTCACACACTGCATCGGTGCAGATTCAGTGTTTAAGATGCACAAACATCCCACAGCGATCTCATTGGCTGAACAGCTGAGGCTTGTTTTTACAGCTATTAACCTTTACCAAAAGTTGGTTTGTGTCTTTTCTAGGGATGCACccaatccaggattcggctgaatatttgggctttttgacaggattctggtttctgccgaaccgtAGAATTTTTTCCcagcgaaccgaaccctacgcttgcactaggCGCGCTATGCTGGTCGCCGTAGTGACGGTGCCggtgattacgggaaggtgtttacgtaggtggagcgttcaatgcagcaggctgtgaggaaatggacatggatctggtgagcagcaggctgtgagaaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagcaggctgtgaggaagtggacatggatctggtgagcagtaggctgtgaagaagtggacatggatctggtgagcagtaggctgtgaggaagtggacatggatcaggtgagcagtaggctgtgaggaagtggacatggatctggtgagcagaacaagttattgtttggcagtactttcagtcaaaagaaggccattcaagtccagctacatgttcaatctgttcaatgctgattggtttggtggtggcgaggaccctaaactatacacaacatggccgctgttacatctggtctgaaacatctgaaagaatacgagttgtgcatgaaggaatctccagacagcagccagaatgcagcaacttcaggtacggcaaaggaaggacagtccctgtttacttcattcatgtgtttactgggttcatggactgaggatgggaggaggagtcagcacaatctcaaccagAGGATTCGGTATTTGGCCGAAATCCccaaaatctggattcggtgcatcccatTTCCCAAAAGATCGTTTGTGTCTTTTCAGGTAGTTCTGATTTACACGTTTTGTTCAAGTGTTTGATTTGTATTAGTTACCTAATGCTATAAAAATGGGGCTAAAATGTCACGATTGACAGTTTGCGATTGgtgtatatacatacactaccggtcaaaagtttggggtcacttacaaatttccattccacccagaatgtcaaagtatatgggagctgtaccacttttaattttgGTACgacgtttagaccaaaaagcatggaTTTCAAGCGTTTCTtgaacagtcgagaacccttttgcaattatgtaagcacataatgtaatctgaaaactgctgccctggttaaaaacacaatgcaactgatctcagctggtattctgtctgtaatggacaTTTCTAAGTTATCCCAAacttttacatacatacatacatacatacatacatacatacatacatacagtacagaccaaaagtttggacacaccttctcattcaatgtat

Function

NR:

description
PREDICTED: collagen alpha-6(VI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3116 True 2323 TUCP 0.45 2 6521506 6534312
TU3119 False 2175 TUCP 0.52 3 6521506 6534312
TU3121 False 1958 TUCP 0.37 2 6532264 6534443

Neighbor

gene id symbol gene type direction distance location
LOC120574032 NA coding downstream 14062 6494570 ~ 6507444 (-)
LOC120574175 NA coding downstream 29707 6488020 ~ 6491799 (-)
LOC120574130 NA coding downstream 39136 6476965 ~ 6482370 (-)
LOC120573968 LOC103383287,LOC103375385,LOC108228344,LOC101483597,LOC101070538,LOC106535156,LOC105919311 coding downstream 45613 6467139 ~ 6475893 (-)
LOC120568678 NA coding downstream 235082 6269260 ~ 6286424 (-)
LOC120569774 NA coding upstream 230097 6764540 ~ 6764654 (-)
LOC120569514 NA coding upstream 231403 6765846 ~ 6765960 (-)
LOC120569560 NA coding upstream 232783 6767226 ~ 6767341 (-)
LOC120569553 NA coding upstream 233740 6768183 ~ 6768294 (-)
LOC120569564 NA coding upstream 234728 6769171 ~ 6769280 (-)
G2185 NA non-coding downstream 127875 6393053 ~ 6393631 (-)
G2184 NA non-coding downstream 139538 6323709 ~ 6381968 (-)
G2196 NA non-coding downstream 148569 6372317 ~ 6372937 (-)
G2194 NA non-coding downstream 154490 6357087 ~ 6367016 (-)
G2180 NA non-coding downstream 204773 6276954 ~ 6316733 (-)
G2226 NA non-coding upstream 19124 6553567 ~ 6553922 (-)
G2228 NA non-coding upstream 28673 6563116 ~ 6563553 (-)
G2234 NA non-coding upstream 54381 6588824 ~ 6589079 (-)
G2248 NA non-coding upstream 96902 6631345 ~ 6632025 (-)
G2250 NA non-coding upstream 110440 6644883 ~ 6652778 (-)
G2177 NA other downstream 254268 6266606 ~ 6267238 (-)
LOC120563747 LOC104946033 other downstream 314616 6200947 ~ 6206890 (-)
G2146 NA other downstream 409914 6111139 ~ 6111592 (-)
LOC120563692 NA other downstream 784520 5731439 ~ 5736986 (-)
LOC120563672 esf1,LOC108229506 other downstream 1021513 5476545 ~ 5499993 (-)
spred2a spred2 other upstream 6199 6540642 ~ 6581598 (-)
vps54 vps54 other upstream 274309 6808752 ~ 6876237 (-)
LOC120565104 peli1,LOC103372217,LOC100709940,LOC102294912,LOC101486541,LOC108247092,LOC107382286 other upstream 354845 6889288 ~ 6938987 (-)
LOC120571633 otx1,LOC102233826 other upstream 464728 6999171 ~ 7017659 (-)
trnae-uuc NA other upstream 487131 7021574 ~ 7021645 (-)

Expression


Co-expression Network