G2258


Basic Information

Item Value
gene id G2258
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6693912 ~ 6694211 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU3174
atacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattgggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggcctatataaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattaggggaccactaaggtctatataaaagagacttcagatacagtattgggggaccactaaggtctatataaaagagacttcagatacagtattgggggaccactaagg

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU3174 True 300 lncRNA 0.39 1 6693912 6694211

Neighbor

gene id symbol gene type direction distance location
LOC120568096 LOC104918539,LOC100694188,LOC102198854,LOC101483894 coding upstream 34593 6591436 ~ 6659319 (+)
LOC120565047 actr2,actr2a,LOC107583198,LOC104930021,LOC108423375 coding upstream 164964 6510225 ~ 6528948 (+)
LOC120569490 LOC105918390 coding upstream 316221 6338303 ~ 6377691 (+)
ppp3r1b PPP3R1,ppp3r1,ppp3r1b,LOC101071292,LOC108441257,LOC107727894,LOC106024317,LOC107699153,LOC107594412,LOC107680167 coding upstream 461313 6163406 ~ 6232599 (+)
cnrip1a cnrip1,LOC102194292,LOC107094923,LOC101465016,LOC100711692,LOC106535151,LOC104918542 coding upstream 536521 6148380 ~ 6157391 (+)
LOC120564833 mdha,mdh1,LOC107382285,LOC106536176 coding downstream 1373 6695584 ~ 6722958 (+)
LOC120564849 ugp2,LOC100710204,LOC101487688 coding downstream 33717 6727928 ~ 6763797 (+)
LOC120569765 NA coding downstream 103255 6797466 ~ 6797580 (+)
LOC120569778 NA coding downstream 104279 6798490 ~ 6798604 (+)
LOC120569812 NA coding downstream 105364 6799575 ~ 6799688 (+)
G2257 NA non-coding upstream 1541 6692141 ~ 6692371 (+)
G2241 NA non-coding upstream 61843 6631673 ~ 6632069 (+)
G2230 NA non-coding upstream 111478 6582125 ~ 6582434 (+)
G1983 NA non-coding upstream 136067 6557606 ~ 6557845 (+)
G1932 NA non-coding upstream 227526 6366489 ~ 6466386 (+)
G2260 NA non-coding downstream 30229 6724440 ~ 6724684 (+)
G2264 NA non-coding downstream 37904 6732115 ~ 6732673 (+)
G2267 NA non-coding downstream 60318 6754529 ~ 6755739 (+)
G2263 NA non-coding downstream 77144 6771355 ~ 6775250 (+)
G2268 NA non-coding downstream 80611 6774822 ~ 6782912 (+)
G1973 NA other upstream 159542 6532441 ~ 6534370 (+)
aftpha LOC102296338,LOC102796226,LOC101483123,LOC102200161 other upstream 256695 6407400 ~ 6437217 (+)
LOC120573424 lgalsl,LOC104947409 other upstream 291272 6385601 ~ 6402640 (+)
snrpb2 snrpb2 other upstream 777538 5876547 ~ 5916374 (+)
acaa1 acaa1,LOC102793903 other upstream 1222503 5387393 ~ 5471409 (+)
G2530 NA other downstream 1005054 7699265 ~ 7699540 (+)
G2557 NA other downstream 1247336 7941547 ~ 7948253 (+)
G2590 NA other downstream 1395602 8089813 ~ 8091505 (+)
LOC120565323 NA other downstream 1707504 8401715 ~ 8415076 (+)
socs7 socs7 other downstream 1923172 8617383 ~ 8643702 (+)

Expression


Co-expression Network