G2293 (mdh1)


Basic Information

Item Value
gene id G2293
gene name mdh1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 6695425 ~ 6722877 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU3216
cgctatgccgtaaacagtttaaatctgagcatgctcgactcacatttgcactcttctcactttgggtagtgacaacatgttacacactggaccttcaaaatcaaaagtcaaaTCGCTGACTTGCAGAATGGCGACCTCAGAACGAAACCAAAACGAGAAGCGGCGAGCACTCACGGAGATGAAGTCTCCTCTGAGCCAGGTCTCGTCCTTCACGGCGTCGTAGGCGGGCGTCTCGCTGCCGTGCAGGTTGACCTTGGCGTGGTGGACGTCGGGGTACTGGGTGGACGAGTGGTTCCCCCAGATGATGACGTTCTTCACTTTGTCGGAGGACACGCCGCAGCGCATCGCCACCTGggGGGTGGCCCTGTTGTGGtccggtgtttttttttttttttttttttttttttttttttttttttttactgtcaggCAGGAGAAGTTCTCTGAGTCTTGAAGATGGCCACGTTGGCCTTCAGCAGGTCCTTCCTCTCCATCCCCTCCTTCCTGGGCATGGAGCCCACCAAGATGGCCGCGTCCAGGTCCTTGAAGCCAACCTCCACCTTGTCAGTGGGAGGGCGCAGTCCTGCAGCTCCATGACGACCCCGTCCAGCACGGGCAGCATGGGGGGGATGTCCAGCAGGACCAAGATGATTGGCTGGTCCTTCCCGAACACATCTCCCTTGGCGATGCTGTACAGCAGGGAGTAGGCAATCTGGCCAGCAGCGCCGGTCACCACGACACGGATTGGTTCGggcCTGCGGAGAAACCGCCCTCACCACCAGATACATGGAAGTTAGCATAGTCAACATGGTCCCGCCGGTGGTTTTTGCTGTCGTTCACAGACAAACTGACTCTCCTCTGATGCAGAAATGGCGTCTCGACCCGAAACGGTACcgggagaaagacagagagacaggtaaacacccacagagacagacagacaggcagcggCACCAGAGTTGACTTTAAACCGCACTGCAGTTCGACTTCACGGCTTCGTGTGCCTCTGTTTGCCTCCAGACTCACTCACACGTCCACCCTCTACCtatgcacacacattaaacacacgcacacacgcacacacattaaagacacacacacaccacacacacacacacacacacacacactgcggtCAGTCTAGTCTCTTAATAAGATTTTGAGGACGTAAATAGCCGCTGACTGAACTGCTATTTAAATCATC
>TU3219
GACGGGGAAGGAGTAGATGAGGTCCTCTGGGATGCCGTAGGAGTTTCCGGCAGCGTACACGCCCATGGAGATGAACTCACCCTCCTTGGTGCCGAACCAGATGTCCCTCATGTGGTCGCAGATGGCCTTGGCGGCAGACATGGCGCTGGACAGCTTCCTGGCTTTGATGACGGCGGCGCCGCGCTGCTGCACCGTGGAGATGAAGTCTCCTCTGAGCCAGGTCTCGTCCTTCACGGCGTCGTAGGCGGGCGTCTCGCTGCCGTGCAGGTTGACCTTGGCGTGGTGGACGTCGGGGTACTGGGTGGACGAGTGGTTCCCCCAGATGATGACGTTCTTCACTTTGTCGGAGGACACGCCGCAGCGCATCGCCACCTGggGGGTGGCCCTGTTGTGGtccggtgtttttttttttttttttttttttttttttttttttttttttactgtcaggCAGGAGAAGTTCTCTGAGTCTTGAAGATGGCCACGTTGGCCTTCAGCAGGTCCTTCCTCTCCATCCCCTCCTTCCTGGGCATGGAGCCCACCAAGATGGCCGCGTCCAGGTCCTTGAAGCCAACCTCCACCTTGTCAGTGGGAGGGCGCAGTCCTGCAGCTCCATGACGACCCCGTCCAGCACGGGCAGCATGGGGGGGATGTCCAGCAGGACCAAGATGATTGGCTGGTCCTTCCCGAACACATCTCCCTTGGCGATGCTGTACAGCAGGGAGTAGGCAATCTGGCCAGCAGCGCCGGTCACCACGACACGGATTGGTTCGggCATTTTGGCTAACGGCTGGAGATGCTGTAGGTCTGCGGTGGCTCAGAGTCGGACTAGAGTAGACGGAAGGGTCACCTCTATCCCTTGTATTTCAGTCAGGCGGTGATACGACTCGTCCCACACTCGTTTATGGGACTTGTAGTCTTTTTTATGATGTTAACACAGGCTTTGACAACTGAGCCGACTCGACAAATGGAACACAATCTCCCGTGATGCACCGCTCCGGTCACACCGCGCCCACCGACGGCTTCGCATCAGAGGCAGAGAAGGAGGATTTTctgaaaaggtttttttttgtcaggaaGTTGCACTTTGGCGACATCTCGTGATTCAATTCAAAACACGTTCATAAACCAACGAGCTACGAGATGACTCGTGTTGATTCGGCGCATACaaagaaacattttgaaaataggaaaaaaaggcaaaaggtacaagactgtgtacaagaAACGGTCACTCAGCGGTAGCCAG

Function

symbol description
mdh1 Predicted to enable L-malate dehydrogenase activity. Predicted to be involved in NADH metabolic process; dicarboxylic acid metabolic process; and tricarboxylic acid cycle. Located in centrosome and cytosol. Implicated in developmental and epileptic encephalopathy 88.

NR:

description
PREDICTED: malate dehydrogenase, cytoplasmic isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU3216 False 1204 lncRNA 0.49 6 6695425 6717654
TU3219 True 1249 lncRNA 0.46 8 6705428 6722877

Neighbor

gene id symbol gene type direction distance location
LOC120574032 NA coding downstream 187981 6494570 ~ 6507444 (-)
LOC120574175 NA coding downstream 203626 6488020 ~ 6491799 (-)
LOC120574130 NA coding downstream 213055 6476965 ~ 6482370 (-)
LOC120573968 LOC103383287,LOC103375385,LOC108228344,LOC101483597,LOC101070538,LOC106535156,LOC105919311 coding downstream 219532 6467139 ~ 6475893 (-)
LOC120568678 NA coding downstream 409001 6269260 ~ 6286424 (-)
LOC120569774 NA coding upstream 41663 6764540 ~ 6764654 (-)
LOC120569514 NA coding upstream 42969 6765846 ~ 6765960 (-)
LOC120569560 NA coding upstream 44349 6767226 ~ 6767341 (-)
LOC120569553 NA coding upstream 45306 6768183 ~ 6768294 (-)
LOC120569564 NA coding upstream 46294 6769171 ~ 6769280 (-)
G2294 NA non-coding downstream 3229 6691920 ~ 6692196 (-)
G2256 NA non-coding downstream 6269 6688689 ~ 6689156 (-)
G2250 NA non-coding downstream 42647 6644883 ~ 6652778 (-)
G2248 NA non-coding downstream 63400 6631345 ~ 6632025 (-)
G2234 NA non-coding downstream 106346 6588824 ~ 6589079 (-)
G2303 NA non-coding upstream 9064 6731941 ~ 6733547 (-)
G2304 NA non-coding upstream 9427 6732304 ~ 6732577 (-)
G2315 NA non-coding upstream 40616 6763493 ~ 6799910 (-)
G2289 NA non-coding upstream 81053 6803930 ~ 6804754 (-)
G2292 NA non-coding upstream 81979 6804856 ~ 6807094 (-)
spred2a spred2 other downstream 113827 6540642 ~ 6581598 (-)
G2219 NA other downstream 160982 6521506 ~ 6534443 (-)
G2177 NA other downstream 428187 6266606 ~ 6267238 (-)
LOC120563747 LOC104946033 other downstream 488535 6200947 ~ 6206890 (-)
G2146 NA other downstream 583833 6111139 ~ 6111592 (-)
vps54 vps54 other upstream 85875 6808752 ~ 6876237 (-)
LOC120565104 peli1,LOC103372217,LOC100709940,LOC102294912,LOC101486541,LOC108247092,LOC107382286 other upstream 166411 6889288 ~ 6938987 (-)
LOC120571633 otx1,LOC102233826 other upstream 276294 6999171 ~ 7017659 (-)
trnae-uuc NA other upstream 298697 7021574 ~ 7021645 (-)
trnae-uuc_1 NA other upstream 300240 7023117 ~ 7023188 (-)

Expression


Co-expression Network