G2878


Basic Information

Item Value
gene id G2878
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 8505134 ~ 8518597 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU4030
gtaaatagtcatgaaaataaaaaggaaacacattgaatgagaaggtgtgtccagaCTTTTGACCTGTACTGTAGATTGTCTTTATTCATACCTTACCTCTCCAAGTTTCATTTAAACGTGAATTTTGCGTCATCAATCATTGGTTGGAGATCTGATCATTTCCAGGTAGAAACCTCACGCGTCTACCAGGACGAAGATAGTCTCGTCGTTTGTCTAACTTATTCAGCAGAAGCCTCCGATACGCTttaaaactagggatgcaccgaatccaggttTTTGGTGTTcgaccgaataccgaatcctcctcccatcctcggTCCATTAACGCAGCGAACGCACTAATGTAGGTAACGTACCTGAAGtcgctgctgtctggagattccttcgcgCACAACTCGTATTTTTTCGGATGTTtcgtaacagcggccatgttgtgtgttgtttagggtcctcgccaccaccagacaaatGGGCGTTGCAGATTGAACacgtagctggacttgaatggccttctttacTACTGCCAAACAtcacttgttctgctcaccGGTTCCattttccactttctcacagcctgctgcgtcgaacgctccacctacgtgaacaccttcccgtaatcaacggcgccgtcgttacggcgaccagcgtagcgcgccgagtgcaagcgtagggttctgTTCGGTGGGAAAAAATACTAAGGTTAGGCAGAATCCGaacccccgtcaaaaagcccgatattcggccgaatcctggattcggtgcatctctatttaaagcgcccatattctgctcattttcaggttcataactgtattttaaggttgtaccagaataggtttacatggtttaattttcaaaaaacaccatattgttgttgtactgcacagctctctctcactgctgcagatcctcttttcacctggtctctgttttagctacagagtgagacctcttttcatcttcttcttctgtactatctttgattgcactcacacatgctcagtagctcagatgtagatcatgtcagctagctaactctagagacagtaaaagactttgttgtttctccaactttggtcagttacaaggcaggatcagctgggagacttctaaatgagggcgcacatggaagtagttcttttgtagattatggtgaacttgtgtgtgttgtagcagtgctttgctattgagaacgaggtagcattctagcgttagcgttagccggctaacgctagcattagctggctaacgctacgagctaacggttgtggttagccagctcatttcggactgtgacgtcacagtccgagacgattttgaacagctcactaggagactgaaggcaggacacattcagaaaccgtatctcactcagaacagcatggatggattgtTTTCTaagcgtgtatgtgtgtggaagccccagagacacaaaagaacaccccaaatcaccagaaaaagtgtttttttctttttcataatatgggcactttaaaacccGTTTTTGCCGAGTGGATCCGAAGGGATCCCTTCACGGCCAGCACGAACAGGAGCAGCTCTCGCAACGTACGAGAAGCGTGCGAGCGCGGTGACGAGATGGACTTAAAATCCTAACCGATCCTTTTTGACTTTTATCATAAATCTTCAAATCAAAcgtaggctacatctacactaccaCGTTTTGATTTAGAaacgaatatcttttgctacgcgTACGCCTCGCGTCCACACTACTCCCACGTTCCCGAGCCCCTGAGAACGGAGACTTTTGGGAAACATCGCTGCCCCCATTTTTGGTTTCAAACGGAGACCTTCGGAAAACGACGGGCGCACAACAGCCGGTCTAATCGGCCTGGCGTTGTTGTCGTTGTTGTTCTCTCTGCAAAAGTCTTTCCAACTTCTACGTCCACGATTTACAACCGCAGAGTAACGTCTGGcagggctgccacctcttaatcgactaatcggtcgttttggtcttagtcgactaagatttctttagttgataagtcattttttatgcttattcataataaattactcatttccaagaaacttctgagcacatttatggtaaacacaagatttaaagtggtgcttttgcaggattaattgtggagaaactcagttttacagatggttaattaactacatttatattgtgcttttctagtcttaaccacctctcacagcgcacagctctgtcgattaaatcaactaatcgattagtcgacaaaatcctATAAGGGTTAGTCGActaatttctttagtcgaggacagccctaacGTCTGTAACGATctgcttcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctgtttttactatattcgtggggtccaaaaaccgggggctatagtatacttgtggggtctgcacagcctcatggggaccaaaatgctggtccccatgagtttaaagggctgtttgagggttaagacttggttttaggactagggttagaattaggttatggttatggttaaggtgagggtaagggttaaggttaggcatttagtggtgatggttaaggttagggtaagggttaaggttaggcatttagtggtgatggttaaggttagggtaagggttaaggttaggcctttagttgggatggttagggtaaggggctagggaatgtaTTATTTCAATGATGGGTCTCCACAAAGATAGTGAtacagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggggggtgtgtgtgtgtggggtgtgtgtggtggtgtgtgtggggggggtcaCGTGATATGTGGTGTCAGACGCGGCCCTAcggacggagattagttctgctaccgGTGCTAAAACTCTCGTGTGGGCCGAGAtcgtttttgtctcaaaacggcgctttaaaaaaaacgaaAGCGTAGCCGCGTAGACGTGACCTCGGCGTCAAACCGACGGCCGTAGCGGCCGACTCAGCTCTCGGGCCTGAGGACGAATGAAAACCGCGTGTCTTAACTCTGCGCGTCAACACCCCCGCGGGATGTGTGTGCAATACAGTCCTCGTCAGCCATTCTGAGGTCAGCGTGAGGTTTTTCTACAGGTCGGTTTCCCGttgggatgaataaagttgTGTCTTTATTATTGGACGTAGAGGAAGGCCTGAAAAGGTTGTTTTTAGAAAGTGAAAAGGATGATGGGAATGTGTCCTCGCGGGCAGACAAAAGAGTTCATTGGGAAGTGTTTGAAGGTTGAGAAGCTGCTGAATATGCTGTGGTGATTCTCGCCTCGCTGTTTGAAGGAGTAGTTCCTTAATTTAGGCTCCAAATGGGAACATCAGGgtttattaaaggtgctctaagcgatgtcacgcgttatttttttttttttttcggttacattttttttttgtcacatactgcaaacatctcctcactatccgctagctgcctgtcccctgaacgcACCgctctctgtagacagcccaggccccacaaacggcaacaaaaacaaaccgcgccaacctgcaccaccaaacatagcCAACAGGTAGGGCTGCGCTCGAtggaagaaattcttagtcgactaacgctCATTCAATTGTACCGACTAACCGAGTCATGCTAAacgcaccactttaattcttgtgtttaccagagatgagctcgtacggttcttggaaataagtcaaaaaagcatcaaacacgactaatcgactaaagacatctaagttgactaagaccgaaacgaccgattagtcgactaatcgactaagagggagcccgacgggacccgatgggttcggtcttaatttctcttattttacacgggctcgggcctGCGCTTCGGGTTGCcatggtaaatgagcggtcagctgatgcgtttcaattagcgtgaaaatggatcctgaggaggtgaaacggaggatggtctctggaggacttagcctgtttctttgttccaacttccaagtggcctacaGCCTCCTCTAGTCATGAATAcatgatgttaaaacatgtagaaatgactcatttttttacgaaagacaaaggagctgtgtgcgtgcggcgcagtctctcttttttttttttctttctctcccttttccgccgagtggtgcgtgtgcccgctcgcggtgcgTGTGCTGATAGacgctgtcagtacccgatccgttccaccggcacgatccgttctgcacatgtgcaagatgacacgtaggcgcagatgataatgctgcgttcattccaccaccaccaccttggaataacggcacgttagttagctaacagctaattcggctaaccgctagctgagacggcatgtaaactttaaaagaccctcaaaataaaacttgaaaataaacgttaacatatataacagctgttacgtcagttctactttacttgtgctcatttaaaatacaatcactcaatacttgtctttattgttattactgtaatgtcttaatttagctgtagctgcttttcccattaagtttgacctaacgttattttagactgaatctagctgcagaaacaacgtaaccagtggggcggggcctgttatttcgaggtggcatgaacgcagcattatcatctgcgcctacgtcatggcatacgtgtcgtcttgcacatgcgcagaacggatcgtgcaggtggaacggatcgggtactgacagacggccttttgtacagtcgggctgtaaactggttcgggcttttaaaaagctgtcaatcaaaatgtacgggtcgggctcgggccttttcgggccgtacttttaaggcccgattacagctctagcttagagcacctttttaaaGGGCTACGCCACCGTttgg
>TU4032
gtgaaggtaaaaccatttcaggtgactacctcatgaagctcattgagagaacaccaagggtttgcagagttatcaaaaaaagcaaagggtggctactttgaggaatctaaaatataagacaagttttcagttatttcacacttttttgttaagtacataattccatatgtgttcattcatagttttgatgccttcagtgagaatctacaatgtaaatagtcatgaaaataaaaaggaaacacattgaatgagaaggtgtgtccagaCTTTTGACCTGTACTGTAGATTGTCTTTATTCATACCTTACCTCTCCAAGTTTCATTTAAACGTGAATTTTGCGTCATCAATCATTGGTTGGAGATCTGATCATTTCCAGGTAGAAACCTCACGCGTCTACCAGGACGAAGATAGTCTCGTCGTTTGTCTAACTTATTCAGCAGAAGCCTCCGATACGCTttaaaactagggatgcaccgaatccaggttTTTGGTGTTcgaccgaataccgaatcctcctcccatcctcggTCCATTAACGCAGCGAACGCACTAATGTAGGTAACGTACCTGAAGtcgctgctgtctggagattccttcgcgCACAACTCGTATTTTTTCGGATGTTtcgtaacagcggccatgttgtgtgttgtttagggtcctcgccaccaccagacaaatGGGCGTTGCAGATTGAACacgtagctggacttgaatggccttctttacTACTGCCAAACAtcacttgttctgctcaccGGTTCCattttccactttctcacagcctgctgcgtcgaacgctccacctacgtgaacaccttcccgtaatcaacggcgccgtcgttacggcgaccagcgtagcgcgccgagtgcaagcgtagggttctgTTCGGTGGGAAAAAATACTAAGGTTAGGCAGAATCCGaacccccgtcaaaaagcccgatattcggccgaatcctggattcggtgcatctctatttaaagcgcccatattctgctcattttcaggttcataactgtattttaaggttgtaccagaataggtttacatggtttaattttcaaaaaaca
>TU4036
catgaaaataaaggaacgcattgaatgagaaggtgtgtccagaCTTTTGACCTGTACTGTAGATTGTCTTTATTCATACCTTACCTCTCCAAGTTTCATTTAAACGTGAATTTTGCGTCATCAATCATTGGTTGGAGATCTGATCATTTCCAGGTAGAAACCTCACGCGTCTACCAGGACGAAGATAGTCTCGTCGTTTGTCTAACTTATTCAGCAGAAGCCTCCGATACGCTttaaaactagggatgcaccgaatccaggttTTTGGTGTTcgaccgaataccgaatcctcctcccatcctcggTCCATTAACGCAGCGAACGCACTAATGTAGGTAACGTACCTGAAGtcgctgctgtctggagattccttcgcgCACAACTCGTATTTTTTCGGATGTTtcgtaacagcggccatgttgtgtgttgtttagggtcctcgccaccaccagacaaatGGGCGTTGCAGATTGAACacgtagctggacttgaatggccttctttacTACTGCCAAACAtcacttgttctgctcaccGGTTCCattttccactttctcacagcctgctgcgtcgaacgctccacctacgtgaacaccttcccgtaatcaacggcgccgtcgttacggcgaccagcgtagcgcgccgagtgcaagcgtagggttctgTTCGGTGGGAAAAAATACTAAGGTTAGGCAGAATCCGaacccccgtcaaaaagcccgatattcggccgaatcctggattcggtgcatctctatttaaagcgcccatattctgctcattttcaggttcataactgtattttaaggttgtaccagaataggtttacatggtttaattttcaaaaaaca

Function

GO: NA

KEGG:

id description
ko04140 Autophagy - animal

RNA

RNA id representative length rna type GC content exon number start site end site
TU4030 True 4920 lncRNA 0.46 2 8505134 8510325
TU4032 False 1074 lncRNA 0.44 2 8509463 8518597
TU4036 False 851 lncRNA 0.47 2 8509463 8518399

Neighbor

gene id symbol gene type direction distance location
LOC120558891 NA coding downstream 47787 8449938 ~ 8457347 (-)
LOC120558917 NA coding downstream 60901 8434631 ~ 8444233 (-)
LOC120558883 NA coding downstream 141461 8358561 ~ 8363673 (-)
LOC120558897 NA coding downstream 172808 8298581 ~ 8332326 (-)
npepps npepps,LOC102793525,LOC107098842,LOC108244358 coding upstream 1338 8519935 ~ 8562298 (-)
gpr179 gpr179,LOC107098834 coding upstream 56636 8575233 ~ 8606773 (-)
si:dkey-23f9.4 NA coding upstream 213471 8732068 ~ 8739288 (-)
ptp4a1 ptp4a1,LOC107563655,LOC107597142 coding upstream 257425 8776022 ~ 8786666 (-)
LOC120569430 NA coding upstream 282656 8801253 ~ 8817185 (-)
G2874 NA non-coding downstream 40347 8463689 ~ 8464787 (-)
G2810 NA non-coding downstream 58982 8252660 ~ 8446152 (-)
G2862 NA non-coding downstream 71233 8392356 ~ 8433901 (-)
G2815 NA non-coding downstream 72410 8395919 ~ 8432724 (-)
G2860 NA non-coding downstream 122058 8382341 ~ 8383076 (-)
G2882 NA non-coding upstream 10352 8528949 ~ 8529762 (-)
G2892 NA non-coding upstream 122706 8641303 ~ 8642482 (-)
G2894 NA non-coding upstream 125598 8644195 ~ 8645191 (-)
G2937 NA non-coding upstream 237769 8756366 ~ 8758100 (-)
G2960 NA non-coding upstream 280894 8799491 ~ 8800133 (-)
wipf2a NA other downstream 3972 8435799 ~ 8501162 (-)
G2840 NA other downstream 295599 8207252 ~ 8209535 (-)
capn9 capn9 other downstream 547513 7935940 ~ 7957621 (-)
G2752 NA other downstream 741186 7739824 ~ 7763948 (-)
akt3b akt3,LOC103470003,LOC103150748,LOC100692017,LOC108246299,LOC101174244 other downstream 814547 7648842 ~ 7690587 (-)
G2938 LOC107098689,LOC103359055 other upstream 240052 8758649 ~ 8767973 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other upstream 387075 8905672 ~ 8908086 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other upstream 990007 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other upstream 1006664 9525261 ~ 9567845 (-)
G3373 LOC103359075 other upstream 1321993 9840590 ~ 10042004 (-)

Expression


Co-expression Network