G3049


Basic Information

Item Value
gene id G3049
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9155939 ~ 9160172 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU4277
TTGCAATGTGAAAACCTCGCAGCAGACATTTTCTCACCCTGGCTTTTCTCGCCTCCGCCGAGCCGGCGGTGCTGGCGCGCGTCTCGCCCCTCCGCCTCGGCAGAAAGCCCCCCTTACAGATGGCAGTCGGATAGACTTGGCAGTCTGAGCAGGTTGACGGGAGTGCAGGGATGAAATCTAAGTAAAGTACGGCAGAATAAAGGCCACCGAAGGCCAGCGTCCCCACCCCCACGCCGCAGTTAGACAACAGGCTTTTAATGGAACGCCACTTCGCAAACGAGCGTTACTTTGGCACGTTGCGTCTACGTTTTAAAAGGTGCCACGGCTGCTTTCAAACTCCACTtagagagggagaaggggatTATTAGGGCCCAAATAGCATATCTGATGCAGCTGAGTGCAGGTCGAACAGGAAATtcagagaaataaaagacactggACTGGTGAAGGAAATGTGGTCAATGCTCTGTGATGGAGTGCATTTCATGAGGTGCCCTTGTGTGTTGCCATGACAATCTCGCAGCATTGTGGAGGTGTTTTTGTGGCCCTTTAGAGCCACCTACATGGACCAGCTGGTCTCTGTTGCTCTGAACTCAACACTGGTTCATCTCCTGCATCGCATTCGAGCATTTGGAGGCTTTGGGTTGAGTTAGGAGAACTGAGCAGAACCGATGCAGTCAAAACAATACCAGTTATTATATTTAGATGATGCTTCTTAAGTTGATTCTTCGGGCTTTGTCCCGCGCCTGTTTGTTTCAAAGGAAATGCTATTGACAGAAGACGtgattatacaaaatatatagtcCCAACACTGACAAACAATTATTTACCACAAAATGTCTGTGATCCTCTTCTCATGTCCTCTTTCCTTTTGTTATTCTCCCAGCAAAACACTTGTTTTTTGTCTCGCTCTCGTTTGTATCCACGTGAGAGCATCTGAGATCAGGTATTTGTCCTTCTCCTAGCTCGTCTCTGAGATGCTCGCTGTTGGTTCTGCTACCTCAGACTTAGGCCTGTAGGGATGTTCAGGTGCAGACTGCATTCAGGAGTCAGTCAGTTGATGTGAAAATTGAAGGCATAGTCCGTTGTTGCCAGTGAAGTACCATTCCAAGCATTTCGTAGCATTCCTAGGCCTGTAGTTCAATGCCGGATGATTTGTCAGGCCTCCCACTGGCGGTCCTCGAGGACAGACTAGTCCCCGATTGTTTTGCCGACCGCGGCCATCTCCTTTTCTCGTTATTCCCCTCAAAAATGTGTCAGATCTTAATTGTCCTGTCACTCAGAAGTGTGAAGTTTCTGGAGATGTTTCAGCACGATGCTGGGGCACTGCACCTCCGtaaatgtttcattttattgtCACTTTCTTTGATGAAAAGTCAAAGTCCCGCTAACTATTTGTCATCCTCTCGGCATCTTTGGGCGGCAGAGCGTGGAGCCTTGGGGCTGACAGGCCCCCGTTTATCCCAGGAGTTCCTGGGCAGCCCCAGGTCCTTCACCTCCCATCAGACCTTTTCATAAACCTCACTGCCGCCTCTTGGGATTATATAAACGACCCAGAGGCCTCTGAACACTGTCTTCCCTctacttttctcttttctttctctttcatctTTTCACAGAGGCTTTGCCACTCTCTCCTCTGATGAGGAACGTGCAgatctagattttttttttaaagacagggCTTGAAGTTCTTTCTGCAACGACGGGGGGGTAGTTATCCTCTGCAATTTTGAGAACCTTTTcgtaaaaaataattaaaaaacaccACTTACACACCACATATACACAGTATTTGGGCAGTCGGTTAATATTTCAGGCTTGGTGAAAGTTTCCTATACTCTCCCGCTGAATAGACTCAACGTTTTAAAGGTTTGGCCGTTAATGTTGTACGATGTCTCTGGTCTCTTGTTTTGATGTTTCAGGGTAACGGGCTTGACTTTTGagtttttgtgtttaaaaaaaaaaaaaaacgtaaaaacaAGGATAAAAAATAACGGCTTGTGTTTTGTCGGAATCGCCAGTGCATTGCTGTGATCCTCTCGTAGCTTCTTTTTGCAGTCTTTGAGCAACATTTGAGCTTTTGTGTCTTCGACGGCCGCGTGATACCTTCTCTCGTCACCCATCAGTTGTGAAGTCTACACTACGTGCAGATAACCACACCAGCCGGTGTATTTATAGTCGAGTCGAGGAGCAACGCTGGCTTGCGAGCGCGATCGATAGTCAGGTCAGACAGACCGGCCCTCGGCGAGCGGATACCGGAGTTCAGTCCTCAGCCAGGAAGTTTGGCAGTACAGAAGATTAAATGTCATGCAGATGATTCCCACTGCCAAAACAGAAACTATTCAGAAACTCTTTAATGGAACAACCTCAAACTCATCTGGCACAAGCTGACTCATGAAAAGCCAGAACAACACCACTTAAAAGGGTTTTTAAAAAgccttcttttttattattattattatttttgactgattCTGTACATTATTTTCAGCCAAATACTTTTTCAGTGCTTTATAAAAACAGCAAGGATTGTACATATGATTAACTCTTAGCAAGGGGAGCCTCATGCGGAGCTCACTTTAACGCTCCGCCTTGTTGGTCCTCTGCAGATCTAACTTACAAGACTTGGGACTGTTGCCTTCCCGAATGTCGGAATTAAGAAAATAAGATGCTCGTACTAACATGACATGAAACATGAGCGCTTTGACTGAATCCGCGTTCAGGGGACAGTAACGCTGAGTGTTTGTTCTTTCTTTTAACTCTTTGATAATAGTTTCCATCTTGGTGTTTCTTGGTGTgcaaaaatgtaaagaagaagaagaagaagacaaaaaaaaaaacttacaacaCAGAATACCTCAGAAAAGAAATCCATGTAACCTTGACGACCTCCACATTATTGTCAGATCCTGACCATCAACATTCATCTCCTGGGCACTTTCATTTCCTGTCCCTTTGtctttgtcccccccccccaaccccccactCGTGCTTCTTTTGCCATGCAGTGCGTAGCGCCCAGTGGAGGTTCCATAGCTTTTTATACCGCTTTGGTTTCACATACAGACGTTACAGGTTCTATGTCACGTGATCACCGTCATGCCGGTAAAGCTTTTTAAGTGGCAGCAAGCGCGTCAAATGGAACCAGTGACGTCTGTAATCGCGTGATCTGTCTTTCAATTTGTGATCGTTCTTGGTCTCTAACTTTTCGCAGCCCACCTTGCGTTCCTCATTTAAAGACGGAAAGGAGGTCGTTTTCGAGACAGTTTGATGCATCTGAAATCAGGCTGTTCTcgtgaaccattcgtacatatagatactaaaagtaatgcactgtaattcgtatgtattCCTGCTTTATATacttttggtgcctaaacttcaCTGTTTTTCGCTAGCCTGGTTGactgcctcaacggttgtgattggaaatgggcttgaatgggctcttgccATTCGATCGGTCGTCGCATGGCAGTCTCAGTAATTACAaaggatatcatacgaattgttgtgcatacgttttcATAAGATATCATGAACCCGTTGGTGAGAACGCGTTGCGCGACTTCCAAACGGCTCGGAAAGATCCCCACAAGATCCTCTTAGAATCACTTCAAAAGATGGATCTGCAtcgtgacaaaaaaaaaatcctaccgtcttttgattttgaaaagtgGGTTTGCTGAAAGAATGAAGGCCAATACGTGGAACACTTGAAACCACACAACCCCTTACGTTGTTCCTTTTCCATACCTCTTTATCTACTTATCTACTCTTTATCGTTGTTAAAaactgaatgtaaaaaaaaaggcaaacacaACTAACCTCTAATTTAACTATACATATTTAAGAATAAGAAATACTCTATATGtgcacatatatataactatacaaGCCCaatgcagacacaaacacaaatgcatatGTATATACAAATCTCTAATGTCATATACTTTTATCTTGAAAAGGAAGAGGATGAGCCTTTTCCATTGATGATTCAGGGAACTAATACAGAAGTCCAGTGCAGTATGTTAGGCAAAGTCACTCCCACTCTGTTCTTGCTTGTTATTTCCCCATGATGTAGCATAGGGCAAAGGGGCGGGGCGACTTGAGTTTTTTTGTTAACAGAAGGAGTAGTAGTGGAACTAGGTCCTAGTGTAGTTGTAGTCTTTTCAAGCCTGATTCTGTGAAAACGGGGGGCGGGGA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4277 True 4212 lncRNA 0.44 2 9155939 9160172

Neighbor

gene id symbol gene type direction distance location
LOC120565400 NA coding downstream 144361 9006939 ~ 9011578 (-)
LOC120559379 NA coding downstream 201097 8943845 ~ 8954842 (-)
dla LOC103359048,LOC108245305 coding downstream 236795 8912382 ~ 8919144 (-)
myom2a myom2,LOC103359051,LOC101482792,LOC102300862 coding downstream 298161 8818287 ~ 8857778 (-)
LOC120569430 NA coding downstream 338754 8801253 ~ 8817185 (-)
lcor LOC103370035,LOC102205115,LOC102298371,LOC101480656,LOC102797307,LOC105931196 coding upstream 5816 9165988 ~ 9246905 (-)
hoga1 hoga1,LOC102797601 coding upstream 144775 9304947 ~ 9331554 (-)
LOC120559457 LOC103383201,LOC105931257 coding upstream 236658 9396830 ~ 9412357 (-)
LOC120559444 LOC103373853,LOC100706153,LOC102224648,LOC104962798,LOC108246276 coding upstream 317508 9477680 ~ 9489740 (-)
atpv0e2 LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 coding upstream 418270 9578442 ~ 9587966 (-)
G3048 NA non-coding downstream 2240 9153250 ~ 9153699 (-)
G3053 NA non-coding downstream 29239 9126183 ~ 9126700 (-)
G3052 NA non-coding downstream 31928 9121713 ~ 9124011 (-)
G3036 NA non-coding downstream 127995 9027007 ~ 9027944 (-)
LOC120559564 NA non-coding downstream 169329 8971674 ~ 8986610 (-)
G3309 NA non-coding upstream 247499 9407671 ~ 9496783 (-)
LOC120559537 NA non-coding upstream 314514 9474686 ~ 9476015 (-)
G3331 NA non-coding upstream 333622 9493794 ~ 9494486 (-)
G3315 NA non-coding upstream 358133 9518305 ~ 9605820 (-)
G3346 NA non-coding upstream 478869 9639041 ~ 9652295 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 247853 8905672 ~ 8908086 (-)
G2938 LOC107098689,LOC103359055 other downstream 387966 8758649 ~ 8767973 (-)
wipf2a NA other downstream 654777 8435799 ~ 8501162 (-)
G2840 NA other downstream 946404 8207252 ~ 8209535 (-)
capn9 capn9 other downstream 1198318 7935940 ~ 7957621 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other upstream 348432 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other upstream 365089 9525261 ~ 9567845 (-)
G3373 LOC103359075 other upstream 680418 9840590 ~ 10042004 (-)
LOC120559237 LOC103359075 other upstream 697908 9858080 ~ 10211304 (-)
G3586 LOC104950333 other upstream 1739386 10899558 ~ 10905235 (-)

Expression


Co-expression Network