LOC120559537


Basic Information

Item Value
gene id LOC120559537
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9474686 ~ 9476015 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU4642
ataaaaaaataattccagTATTCAACACTTGAGTGGAACGGATGATGTGAgagtgtgtttgcgtgcgtgcctgcgtgAGTTACAGTGACTGGATGAGCGGAAGTGGACTGGATCAGCTTGATAGAGATCGGGTCTCAGCACGGCTGAGCTATCCACTTTGTGTTGTCCTTCAAAGGAAAAACGCCCTGTAAAAGGTGGGTCAAAAATATTTAGCTTTTCTTTGTGGTTAGCGTTCTGACCACAGTGCAATTTCTTTTGACGCAACATAAGGAAAGGGGGTTATTGCATTAACTGTTTCATGTCATCACTTCGGTATCTTTTGCGGGTGCTTTTAAATTCACGCACACGTGAGGGATTGTCTCTGGGTGGAGCCGCGGACACATCGCTGACAGGCTCGTAGACTCATGCtgaaagTCTACAGATCCTCCCCTGGAAGGTAGCAGCAAAGGAaaacctggattattttaaattCAGACACACGAGTATGgagaaaaagttaaaacagCTGAAGACTATTTAAAGTAAATGATTGTGTTGCTCATGCGGAGCCAAGTTTCAGGATTGGGACACCAAAGACAGAGCGATAGAGACAGCAGGGGAACTTTTGGTTTGTCGGAGGACGACACTAATGTGAAAAGCTTGAACGCTGTCTGTCTGAGAGCGACACCTGTATTTTGTGAATTGTAAATAAACTCGCTAAGGCAGCTCCTCGCAGAAGCAGGGTCTTCTCTTGGTGCTGGCTCATCAAGCGCTGAC
>TU4643
ataaaaaaataattccagTATTCAACACTTGAGTGGAACGGATGATGTGAgagtgtgtttgcgtgcgtgcctgcgtgAGTTACAGTGACTGGATGAGCGGAAGTGGACTGGATCAGCTTGATAGAGATCGGGTCTCAGCACGGCTGAGCTATCCACTTTGTGTTGTCCTTCAAAGGAAAAACGCCCTGTAAAAGaaagTCTACAGATCCTCCCCTGGAAGGTAGCAGCAAAGGAaaacctggattattttaaattCAGACACACGAGTATGgagaaaaagttaaaacagCTGAAGACTATTTAAAGTAAATGATTGTGTTGCTCATGCGGAGCCAAGTTTCAGGATTGGGACACCAAAGACAGAGCGATAGAGACAGCAGGGGAACTTTTGGTTTGTCGGAGGACGACACTAATGTGAAAAGCTTGAACGCTGTCTGTCTGAGAGCGACACCTGTATTTTGTGAATTGTAAATAAACTCGCTAAGGCAGCTCCTCGCAGAAGCAGGGTCTTCTCTTGGTGCTGGCTCATCAAGCGCTGAC
>XR_005639308.1
tataataaaaaaataattccagTATTCAACACTTGAGTGGAACGGATGATGTGAgagtgtgtttgcgtgcgtgcctgcgtgAGTTACAGTGACTGGATGAGCGGAAGTGGACTGGATCAGCTTGATAGAGATCGGGTCTCAGCACGGCTGAGCTATCCACTTTGTGTTGTCCTTCAAAGGAAAAACGCCCTGTAAAAGGTGGGTCAAAAATATTTAGCTTTTCTTTGTGGTTAGCGTTCTGACCACAGTGCAATTTCTTTTGACGCAACATAAGGAAAGGGGGTTATTGCATTAACTGTTTCATGTCATCACTTCGGTATCTTTTGCGGGTGCTTTTAAATTCACGCACACGTGAGGGATTGTCTCTGGGTGGAGCCGCGGACACATCGCTGACAGGCTCGTAGACTCATGCtgaaagTCTACAGATCCTCCCCTGGAAGGTAGCAGCAAAGGAaaacctggattattttaaattCAGACACACGAGTATGgagaaaaagttaaaacagCTGAAGACTATTTAAAGTAAATGATTGTGTTGCTCATGCGGAGCCAAGTTTCAGGATTGGGACACCAAAGACAGAGCGATAGAGACAGCAGGGGAACTTTTGGTTTGTCGGAGGACGACACTAATGTGAAAAGCTTGAACGCTGTCTGTCTGAGAGCGACACCTGTATTTTGTGAATTGTAAATAAACTCGCTAAGGCAGCTCCTCGCAGAAGCAGGGTCTTCTCTTGGTGCTGGCTCATCAAGCGCTGACAGAACTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4642 False 756 lncRNA 0.45 2 9474694 9476011
TU4643 False 540 lncRNA 0.45 2 9474694 9476011
XR_005639308.1 True 768 lncRNA 0.45 2 9474686 9476015

Neighbor

gene id symbol gene type direction distance location
LOC120559457 LOC103383201,LOC105931257 coding downstream 62329 9396830 ~ 9412357 (-)
hoga1 hoga1,LOC102797601 coding downstream 143132 9304947 ~ 9331554 (-)
lcor LOC103370035,LOC102205115,LOC102298371,LOC101480656,LOC102797307,LOC105931196 coding downstream 227781 9165988 ~ 9246905 (-)
LOC120565400 NA coding downstream 463108 9006939 ~ 9011578 (-)
LOC120559379 NA coding downstream 519844 8943845 ~ 8954842 (-)
LOC120559444 LOC103373853,LOC100706153,LOC102224648,LOC104962798,LOC108246276 coding upstream 1665 9477680 ~ 9489740 (-)
atpv0e2 LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 coding upstream 102427 9578442 ~ 9587966 (-)
LOC120565745 NA coding upstream 696070 10172085 ~ 10181987 (-)
LOC120567750 LOC103370659 coding upstream 1021308 10497323 ~ 10571770 (-)
LOC120567745 LOC101486982,LOC102213734 coding upstream 1103270 10579285 ~ 10624015 (-)
G3049 NA non-coding downstream 314514 9155939 ~ 9160172 (-)
G3048 NA non-coding downstream 320987 9153250 ~ 9153699 (-)
G3053 NA non-coding downstream 347986 9126183 ~ 9126700 (-)
G3052 NA non-coding downstream 350675 9121713 ~ 9124011 (-)
G3036 NA non-coding downstream 446742 9027007 ~ 9027944 (-)
G3331 NA non-coding upstream 17779 9493794 ~ 9494486 (-)
G3315 NA non-coding upstream 42290 9518305 ~ 9605820 (-)
G3346 NA non-coding upstream 163026 9639041 ~ 9652295 (-)
G3352 NA non-coding upstream 171590 9647605 ~ 9683644 (-)
G3348 NA non-coding upstream 177768 9653783 ~ 9696009 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 566600 8905672 ~ 8908086 (-)
G2938 LOC107098689,LOC103359055 other downstream 706713 8758649 ~ 8767973 (-)
wipf2a NA other downstream 973524 8435799 ~ 8501162 (-)
G2840 NA other downstream 1265151 8207252 ~ 8209535 (-)
capn9 capn9 other downstream 1517065 7935940 ~ 7957621 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other upstream 32589 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other upstream 49246 9525261 ~ 9567845 (-)
G3373 LOC103359075 other upstream 364575 9840590 ~ 10042004 (-)
LOC120559237 LOC103359075 other upstream 382065 9858080 ~ 10211304 (-)
G3586 LOC104950333 other upstream 1423543 10899558 ~ 10905235 (-)

Expression


Co-expression Network