G3346


Basic Information

Item Value
gene id G3346
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 9639041 ~ 9652295 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU4678
ACTGGACATCTATAAATTGAGATGTAGACTTGATGTGTCCGTGTTGATTCTCAGACTTGCAGTAGTAGTTCCCTCTGTCCTCAGATCTGATGGAGATGAAATGGTAGATGGCTTGTTGTCCATGACGCAGTGTTTGGTTCTCCTTGTACCAGGTGTAGTtagctgctgggttagcatcactgctacaggtcagagtcactgaactgccctccactatctcagcagagggactcactgacacagagggaagC
>TU4680
GTTCTGACGTCCTCTTCTGTTCTGGGCTTCACAGTAAAATAGTCAGTGATGGTGAAGATCTGTCCTGATGCTTTTGGTGAGTCTTCATTCTCCTTGTACCAGGTGTAGTtagctgctgggttagcatcactgctacaggtcagagtcactgaactgccctccactatctcagcagagggactcactgacacagagggaagC

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
TU4678 True 251 lncRNA 0.57 2 9639041 9652295
TU4680 False 201 lncRNA 0.42 2 9639041 9640273

Neighbor

gene id symbol gene type direction distance location
atpv0e2 LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 coding downstream 51075 9578442 ~ 9587966 (-)
LOC120559444 LOC103373853,LOC100706153,LOC102224648,LOC104962798,LOC108246276 coding downstream 149301 9477680 ~ 9489740 (-)
LOC120559457 LOC103383201,LOC105931257 coding downstream 226684 9396830 ~ 9412357 (-)
hoga1 hoga1,LOC102797601 coding downstream 307487 9304947 ~ 9331554 (-)
lcor LOC103370035,LOC102205115,LOC102298371,LOC101480656,LOC102797307,LOC105931196 coding downstream 392136 9165988 ~ 9246905 (-)
LOC120565745 NA coding upstream 519790 10172085 ~ 10181987 (-)
LOC120567750 LOC103370659 coding upstream 845028 10497323 ~ 10571770 (-)
LOC120567745 LOC101486982,LOC102213734 coding upstream 926990 10579285 ~ 10624015 (-)
ccdc130 ccdc130 coding upstream 973029 10625324 ~ 10631727 (-)
wdr83 wdr83,LOC102798015 coding upstream 994782 10647077 ~ 10655066 (-)
G3315 NA non-coding downstream 33221 9518305 ~ 9605820 (-)
G3309 NA non-coding downstream 142258 9407671 ~ 9496783 (-)
G3331 NA non-coding downstream 144555 9493794 ~ 9494486 (-)
LOC120559537 NA non-coding downstream 163026 9474686 ~ 9476015 (-)
G3049 NA non-coding downstream 478869 9155939 ~ 9160172 (-)
G3348 NA non-coding upstream 1488 9653783 ~ 9696009 (-)
G3360 NA non-coding upstream 41029 9693324 ~ 9824263 (-)
G3361 NA non-coding upstream 48776 9701071 ~ 9765048 (-)
G3368 NA non-coding upstream 99034 9751329 ~ 9755028 (-)
G3367 NA non-coding upstream 119277 9771572 ~ 9772935 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other downstream 71196 9525261 ~ 9567845 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 730955 8905672 ~ 8908086 (-)
G2938 LOC107098689,LOC103359055 other downstream 871068 8758649 ~ 8767973 (-)
wipf2a NA other downstream 1137879 8435799 ~ 8501162 (-)
G2840 NA other downstream 1429506 8207252 ~ 8209535 (-)
G3373 LOC103359075 other upstream 188295 9840590 ~ 10042004 (-)
LOC120559237 LOC103359075 other upstream 205785 9858080 ~ 10211304 (-)
G3586 LOC104950333 other upstream 1247263 10899558 ~ 10905235 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other upstream 1314067 10966362 ~ 10993201 (-)
c1qtnf6b c1qtnf6,LOC103374348 other upstream 2989718 12642013 ~ 12659983 (-)

Expression


Co-expression Network