G3409


Basic Information

Item Value
gene id G3409
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10025783 ~ 10026230 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU4766
GAACAATGCTGTCAACTTTAAGAGTTCCAGTGCTACTACAGAATCAGGAAATCAAAAGGCTGTGGAGGATTTATCTGAACTGTACAGCACAGTCAGCAAACACCCAAGACTTTGAACACAACACAGATCTGTGGTCTCTTTAAagggcagggttggtaatgttgaaaaactAGCAAGATTTGAAGGAAGCATCTCCTCGGTGctccgtctaacccctccccctgcctcGCTACTTTAGACATTGTTCAAGCAGgttaaacacacatttatgaGTATTAGGATTAagttgatatactgtattttatgcATTATTATGAAATGCAGCGTTGGTCATTTATCTAGTGTCA

Function

NR:

description
PREDICTED: CCAAT/enhancer-binding protein epsilon-like isoform X1

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes
ko03430 Mismatch repair

RNA

RNA id representative length rna type GC content exon number start site end site
TU4766 True 347 lncRNA 0.61 2 10025783 10026230

Neighbor

gene id symbol gene type direction distance location
atpv0e2 LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 coding downstream 437817 9578442 ~ 9587966 (-)
LOC120559444 LOC103373853,LOC100706153,LOC102224648,LOC104962798,LOC108246276 coding downstream 536043 9477680 ~ 9489740 (-)
LOC120559457 LOC103383201,LOC105931257 coding downstream 613426 9396830 ~ 9412357 (-)
hoga1 hoga1,LOC102797601 coding downstream 694229 9304947 ~ 9331554 (-)
lcor LOC103370035,LOC102205115,LOC102298371,LOC101480656,LOC102797307,LOC105931196 coding downstream 778878 9165988 ~ 9246905 (-)
LOC120565745 NA coding upstream 145855 10172085 ~ 10181987 (-)
LOC120567750 LOC103370659 coding upstream 471093 10497323 ~ 10571770 (-)
LOC120567745 LOC101486982,LOC102213734 coding upstream 553055 10579285 ~ 10624015 (-)
ccdc130 ccdc130 coding upstream 599094 10625324 ~ 10631727 (-)
wdr83 wdr83,LOC102798015 coding upstream 620847 10647077 ~ 10655066 (-)
G3347 NA non-coding downstream 25156 9994697 ~ 10000627 (-)
LOC120559605 NA non-coding downstream 28198 9996875 ~ 9997585 (-)
G3396 NA non-coding downstream 44785 9921320 ~ 9980998 (-)
G3397 NA non-coding downstream 78252 9926672 ~ 9947531 (-)
LOC120559540 NA non-coding downstream 123722 9898896 ~ 9902061 (-)
LOC120559549 NA non-coding upstream 42259 10068489 ~ 10070063 (-)
G3418 NA non-coding upstream 46096 10072326 ~ 10072973 (-)
LOC120559577 NA non-coding upstream 46871 10073101 ~ 10073828 (-)
G3421 NA non-coding upstream 62388 10088618 ~ 10099262 (-)
G3424 NA non-coding upstream 72827 10099057 ~ 10100398 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other downstream 385269 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other downstream 457938 9525261 ~ 9567845 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 1117697 8905672 ~ 8908086 (-)
G2938 LOC107098689,LOC103359055 other downstream 1257810 8758649 ~ 8767973 (-)
wipf2a NA other downstream 1524621 8435799 ~ 8501162 (-)
G3586 LOC104950333 other upstream 873328 10899558 ~ 10905235 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other upstream 940132 10966362 ~ 10993201 (-)
c1qtnf6b c1qtnf6,LOC103374348 other upstream 2615783 12642013 ~ 12659983 (-)
LOC120561813 NA other upstream 2778272 12804502 ~ 12832356 (-)
trnac-gca NA other upstream 2834054 12860284 ~ 12860355 (-)

Expression


Co-expression Network