G3557 (LOC103372545)


Basic Information

Item Value
gene id G3557
gene name LOC103372545
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 10833570 ~ 10833876 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU4944
CTGCAGGATGGCGTTGGTGGAGGGGTAGGGATAGACAGGTGGCATGTCTATTTTGGTGTACTCAGGTTTGGCCATGCTGGTCAGGATCAGGCTGTCcatgctgtggaggagggtgtGGGTGTCTGCGTCACGGCAGTTCAGCAGGTTGTTGACGTGGTCAGGATGGTCCGGGTGATCCGGTGGGAGGGCGTAAGGGTGCTCATGGGCACCGGCCAGCTTGCTGTTGTTGCGGAAGTTGTCCAGATCCTCGTTGTACTGCTGTATGGGCCGTGTGGTGGAGAGGCTGGGACCCGTGCTGTGGTGCTCC

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: voltage-dependent P/Q-type calcium channel subunit alpha-1A-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4944 True 307 lncRNA 0.42 1 10833570 10833876

Neighbor

gene id symbol gene type direction distance location
wdr83 wdr83,LOC102798015 coding downstream 178504 10647077 ~ 10655066 (-)
ccdc130 ccdc130 coding downstream 201843 10625324 ~ 10631727 (-)
LOC120567745 LOC101486982,LOC102213734 coding downstream 209555 10579285 ~ 10624015 (-)
LOC120567750 LOC103370659 coding downstream 261800 10497323 ~ 10571770 (-)
LOC120565745 NA coding downstream 651583 10172085 ~ 10181987 (-)
ier2b NA coding upstream 90795 10924671 ~ 10926308 (-)
man2b1 man2b1 coding upstream 188718 11022594 ~ 11047950 (-)
LOC120555815 LOC103383434 coding upstream 220111 11053987 ~ 11076146 (-)
gtpbp1l LOC101485704,LOC102291158,LOC102198385,LOC103371799,LOC100709644 coding upstream 833651 11667527 ~ 11685699 (-)
LOC120555467 LOC103371801,LOC104957815,LOC100709917 coding upstream 860625 11694501 ~ 11696303 (-)
G3498 NA non-coding downstream 171009 10657336 ~ 10662561 (-)
G3493 NA non-coding downstream 208508 10624780 ~ 10625062 (-)
LOC120559609 NA non-coding downstream 620695 10211424 ~ 10212875 (-)
G3439 NA non-coding downstream 672761 10159224 ~ 10160809 (-)
G3424 NA non-coding downstream 733172 10099057 ~ 10100398 (-)
G3566 NA non-coding upstream 44815 10878691 ~ 10878890 (-)
G3580 NA non-coding upstream 49271 10883147 ~ 10883412 (-)
G3581 NA non-coding upstream 51954 10885830 ~ 10886075 (-)
G3582 NA non-coding upstream 52410 10886286 ~ 10886617 (-)
G3584 cacna1a,LOC104950333 non-coding upstream 61760 10895636 ~ 10896812 (-)
LOC120559237 LOC103359075 other downstream 622266 9858080 ~ 10211304 (-)
G3373 LOC103359075 other downstream 791566 9840590 ~ 10042004 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other downstream 1193056 9508604 ~ 9640514 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other downstream 1265725 9525261 ~ 9567845 (-)
G3011 zbtb45,LOC100704009,LOC108245322,LOC107382413,LOC105931202 other downstream 1925484 8905672 ~ 8908086 (-)
G3586 LOC104950333 other upstream 65682 10899558 ~ 10905235 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other upstream 132486 10966362 ~ 10993201 (-)
c1qtnf6b c1qtnf6,LOC103374348 other upstream 1808137 12642013 ~ 12659983 (-)
LOC120561813 NA other upstream 1970626 12804502 ~ 12832356 (-)
trnac-gca NA other upstream 2026408 12860284 ~ 12860355 (-)

Expression


Co-expression Network