LOC120566853 (snrpb2,LOC102212107,LOC102301910,LOC101474810)


Basic Information

Item Value
gene id LOC120566853
gene name snrpb2,LOC102212107,LOC102301910,LOC101474810
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 1746571 ~ 1836460 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU500
AGAAAATCTCTCTGGGTTGTCTGGGAGATTCTTCCTCACACCACCGTGATTCACTTGTTTCCCATCATAAGACAGGATGAGTTTAGGATGtgctgtatcaggatcaagagtcacatccactgcatactgctggACCCTCTTCAGCTCGGCTtcaagcagcttcttcatctctttactgagtgtctcctccagctgaACCACAGCTTTCACCACAGTCCCCTCATATGATGATGGACGGATGCTGACCTCTGTCCAGTCCTTGGTGGGTGGAGGTTGTTGGATGTTTAGGGACTGGACactctggagaagatggaggtggtCTTCAGAGCGTAACACctgctccacctcagtgcttctcttcatcagctcagagatttcctgttccagctctttgatgaaagcttcggcctgtttttctgttgttttctgcttctctttgatcgtgttgatgagctcattcaggcctctctcaacagactccttcagagaagtgaagacctgaacaccttctgctatctctctgtctgcatcttcctcactgaggtcgactgagtgtttgatctcctgaatcttcagtcgtctcttctggatcatctgctGAATTTCAGCCTCTGTCTTCCCCAGCTCTGCCTTCTTCCCTTCATATCCTTCTTTCAGAGGAACAACATCATGCTTCTTGTGGTCTAAAACAGTgcagagcatgcagacacatgtctggtcggtcttacagaacagctccagaggTTTATCGTGCTTCGTACACATCCTGCCTTCCAGGTTCTCCACAGGGTcgatcagctgatgtcttttcagaCGTGAAACTGtcagatgaggctccaggtgagtctcacagtaggagaccagacacacaaagcaggacttcagggccttcagtttggttccagtgcagacatcacagggaacttctcctggtttggacacttgttgctctgagctgctgctgctggctttctgtTGAGCTGACTGTCTGAACTGAGCAACCATCTCAGAGATGAAAGTGTTGACATGCAGCTCAGGTTTTGTGTTGAAAACCTTGTTACACATCGGACACAGGTACTGGTCATTAGTATTCCAGTGTTCATTGATGCAGTTTTTGCAGAAGTTGTGTCCACATAGTATGGTGACAGGATCAGTAAACACATCCAAacagatggagcacagaaactgatcttcagATGATAGATAGTTTGCAGCAGCCATAT
>TU501
tAGATTTTGAAAAGCTctctataaataaagattaGTATTGACAgggtttctttgtgtgttttttgtcctCTGCAGGTTTCCTGGTTTCAAAGAGGTGCGACTGGTCCCGGGGAAACACGACATCTCCTTCGTGGAGTTTGAGAGCGAGACGCAGGCGGGCGTGGCTAAAGACGCACTGCAAGGCTTCCGGATCACAGCCACCTGCGCCATGAAGATCACCTACGCCAAGAAGTAGTCCCCGAGTTCAGTCGCTGGACACACAGAGACTCTGAGGGGGACATGGTCCCTGGATTACCGTTGGGGTCCCACATTGATTTTTGTAAATCATAcacagctgtttgttttttgttttgttggtaaaaTTCAGTCCCAT
>TU502
CTCCCCATTGATTCCAATGGAAGCAATTCTAAAACTTAACCCTGGTAAGATGGCCGCCAAGTGCTTCCATCCTGGAATGGTTTCCTGGTTTCAAAGAGGTGCGACTGGTCCCGGGGAAACACGACATCTCCTTCGTGGAGTTTGAGAGCGAGACGCAGGCGGGCGTGGCTAAAGACGCACTGCAAGGCTTCCGGATCACAGCCACCTGCGCCATGAAGATCACCTACGCCAAGAAGTAGTCCCCGAGTTCAGTCGCTGGACACACAGAGACTCTGAGGGGGACAAAGGGGGACATGGTCCCTGGATTACCGTTGGGGTCCCACATTGATTTTTGTAAATCATAcagagctgtttgttttttgttttgttggtaaaaTTCAGTCCCGTCG
>TU503
TTTGTACACATCCTGCCTTCCAGGTTCTCCACAGCGTcgatcagctgatgtcttttcagGCGTAACATTGtcagatgaggctccaggtgagtctcacagtaggagaccagacacacaaagcaggacttcagggccttcagtttggttccagtgcagacatcacagggaacttctcctggtttggacacttgttgctctgagctgctgctgctggctttctgtTGAGCTGACTGTCTGAACTGAGCAACCATCTCAGAGATGAAAGTGTTGACATGCAGCTCAGGTCTTATGTTGAAAACCTTGTTACACATCGGACACAGGTTTCCTGGTTTCAAAGAGGTGCGACTGGTCCCGGGGAAACACGACATCTCCTTCGTGGAGTTTGAGAGCGAGACGCAGGCGGGCGTGGCTAAAGACGCACTGCAAGGCTTCCGGATCACAGCCACCTGCGCCATGAAGATCACCTACGCCAAGAAGTAGTCCCCGAGTTCAGTCGCTGGACACACAGAGACTCTGAGGGGGACATGGTCCCTGGATTACCGTTGGGGTCCCACATTGATTTTTGTAAATCATAcacagctgtttgttttttgttttgttggtaaaaTTCAGTCCCAT
>TU504
GCAGCACCTAACTGCTTTACCAGAAGGACCAAAGAGACCCAGGAGGCTGCCATCACTTTCCACACGTTTCCTGGTTTCAAAGAGGTGCGACTGGTCCCGGGGAAACACGACATCTCCTTCGTGGAGTTTGAGAGCGAGACGCAGGCGGGCGTGGCTAAAGACGCACTGCAAGGCTTCCGGATCACAGCCACCTGCGCCATGAAGATCACCTACGCCAAGAAGTAGTCCCCGAGTTCAGTCGCTGGACACACAGAGACTCTGAGGGGGACATGGTCCCTGGATTACCGTTGGGGTCCCACATTGATTTTTGTAAATCATAcacagctgtttgttttttgttttgttggtaaaaTTCAGTCCCAT
>TU507
CTCCCCATTGATTCCAATGGAAGCAATTCTAAAACTTAACCCTGGTAAGATGGCCGCCAAGTGCTTCCATCCTGGAATGGTTTCCTGGTTTCAAAGAGGTGCGACTGGTCCCGGGGAAACACGACATCTCCTTCGTGGAGTTTGAGAGCGAGACGCAGGCGGGCGTGGCTAAAGACGCACTGCAAGGCTTCCGGATCACAGCCACCTGCGCCATGAAGATCACCTACGCCAAGAAGTAGTCCCCGAGTTCAGTCGCTGGACACACAGAGACTCTGAGGGGGACATGGTCCCTGGATTACCGTTGGGGTCCCACATTGATTTTTGTAAATCATAcacagctgtttgttttttgttttgttggtaaaaTTCAGTCCCAT
>XM_039813518.1
CACATGGCACTGCTTCACATCCACAAAGACATTTTGGATGATCTGGATATTCAGGGTCTCATGGCAGAGTTTATCAGCCGAACTCCAGAGGGCAAATCTACCTTTGGTGTACCGGAAATCATCGTAAGGTTTCCTGGTTTCAAAGAGGTGCGACTGGTCCCGGGGAAACACGACATCTCCTTCGTGGAGTTTGAGAGCGAGACGCAGGCGGGCGTGGCTAAAGACGCACTGCAAGGCTTCCGGATCACAGCCACCTGCGCCATGAAGATCACCTACGCCAAGAAGTAGTCCCCGAGTTCAGTCGCTGGACACACAGAGACTCTGAGGGGGACAAAGGGGGACATGGTCCCTGGATTACCGTTGGGGTCCCACATTGATTTTTGTAAATCATAcagagctgtttgttttttgttttgt

Function

symbol description
snrpb2 Predicted to enable U1 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U1 snRNP. Human ortholog(s) of this gene implicated in connective tissue disease. Orthologous to human SNRPB2 (small nuclear ribonucleoprotein polypeptide B2).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0017069 snRNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU500 True 1223 lncRNA 0.42 3 1746571 1790866
TU501 False 373 lncRNA 0.52 2 1823935 1836460
TU502 False 389 lncRNA 0.44 2 1816292 1824319
TU503 False 618 TUCP 0.47 4 1778986 1836460
TU504 False 363 lncRNA 0.43 3 1815087 1836460
TU507 False 377 lncRNA 0.48 3 1816292 1836460
XM_039813518.1 False 417 mRNA 0.51 2 1822408 1824298

Neighbor

gene id symbol gene type direction distance location
LOC120566732 NA coding upstream 164875 1580314 ~ 1581696 (+)
LOC120566800 NA coding upstream 300246 1439840 ~ 1446325 (+)
LOC120566759 NA coding upstream 347307 1389769 ~ 1399264 (+)
LOC120566750 NA coding upstream 377519 1363957 ~ 1369052 (+)
LOC120566495 NA coding upstream 399377 1341624 ~ 1347194 (+)
polr3f polr3f,LOC102798306 coding downstream 141860 1978320 ~ 1986023 (+)
LOC120561186 sptbn1,LOC100697102 coding downstream 159276 1995736 ~ 2061046 (+)
LOC120566013 NA coding downstream 233685 2070145 ~ 2074287 (+)
LOC120561285 NA coding downstream 300617 2137077 ~ 2185576 (+)
LOC120561330 NA coding downstream 361514 2197974 ~ 2201400 (+)
G384 NA non-coding upstream 50593 1689520 ~ 1695978 (+)
G381 NA non-coding upstream 51019 1675442 ~ 1695552 (+)
G376 NA non-coding upstream 70661 1615905 ~ 1675910 (+)
G377 NA non-coding upstream 107383 1616696 ~ 1639188 (+)
G329 NA non-coding upstream 167556 1441552 ~ 1579015 (+)
G621 NA non-coding downstream 102314 1938774 ~ 1939052 (+)
G675 NA non-coding downstream 231372 2067832 ~ 2106737 (+)
G676 NA non-coding downstream 246368 2082828 ~ 2129416 (+)
G684 NA non-coding downstream 293796 2130256 ~ 2130784 (+)
G690 NA non-coding downstream 334488 2170948 ~ 2172470 (+)
G355 NA other upstream 209874 1536215 ~ 1536697 (+)
G149 LOC104959125,LOC105030654 other upstream 434140 1311867 ~ 1312431 (+)
G151 NA other upstream 527486 1193661 ~ 1219085 (+)
G165 NA other upstream 588012 1144654 ~ 1158559 (+)
G292 NA other upstream 602158 1116624 ~ 1144413 (+)
LOC120566000 NA other downstream 109685 1946145 ~ 1967255 (+)
G714 LOC103375176,LOC105920176,LOC100706186,LOC101468385 other downstream 470825 2307285 ~ 2346048 (+)
LOC120566146 LOC107082675,LOC108251143,LOC103383281 other downstream 722416 2558876 ~ 2570454 (+)
G879 NA other downstream 789783 2626243 ~ 2700975 (+)
LOC120567073 sos1 other downstream 1158569 2995029 ~ 3080190 (+)

Expression


Co-expression Network