G3828


Basic Information

Item Value
gene id G3828
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12435552 ~ 12437402 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU5258
CAATACCGTCACATCAGGATGCTTTGTGTGTCATGATGGAGATTGTACATATTTTACCTCTATTTGTGCCCACCGATGTGCATATAAATATGTGTGGCATTGCAAAGCACTTTCCTAGAGCTTTGATGTAGATGTGAGCCAtgattgtacacacacacacacatagaagtATAATCCAAGTTCTTGACTATTCTGGAAAATCAATCTAAGCACTTCAACAGTATCCTACAGTCTGTCTTCTATTCGTTTTAAATGGAGCATCATGTCTTGGGAATATCACTTAGGATAGAGTGTGGGCTGTTGCTTATTGCTTTGGGAGATACTTTTTCATTTCGACAGATATTGAAACGGTTGGTCAGCGATTATAGAAATGTTGGGACAAGCCTGTTTTGGTTGGCTCGATACACCTACAGTGTCATATGTTCCCATTTCACGAAGTTATGCACTCTCAATTAGTATTCAAAGCAGGTCTTCCCTTTTGGCGCAGACCTCTATCACAGCAGGAGCAACTGCTGTTCACCTTTTAGCCACAAGAGAGGGCAAAAGCGGTCACTGCCCATTCAAAGCTGACAGATCTGTAGTAGGTGATAGATGTCAACTGTGCGATGTTTCTGACCGCGGGATGGTTAGGAACTGGGGAATGTGTGTCAGGGTAAAATGAGTAATAATTCTGATGATTTTCATGGCTGTCAAGACCACTAATGCAGAACACAACCACCTCTTCCTCCACAATTTGGTTAAATTCATATCGTAGATAGACTTGTTTTATGTCTGACTATAACCAAGTAGAACTAAAGACTATCTTATGATATTCAGTAATTAATGCAGGGCATATTGCAGTACTCAGCAGGCCAGTGATGAATATTTTAAAACTGCTCATGCCTCACATATTAATGCTTACATGTGCCATTACGTGGGTGCTTTTATCTAAAGTATACCATAAGTGCATTTTATCATTCACGACCCCAGTGGGCACATAACTACTATAGTGCGGCCTTGCAGTACGGTATCAAGTGATTTTAAATAGGGAATAACAAAAAGGTTGCACATTCTCAATATATGCACCTACATACTCAATTTAAAAGTGCACGCATGGTTTATAAATCTAAATACCTGGACTCAAACAACAATGGCATTCTGcaacaaattaatattttttatcatATTTACCACAGCCAAACTCTACATATTAGGAAAACAATTAGGACTAAGGAGTGCACTGTTTACTGATATGTTACGGGTTGACGTCCTTCAAACTCTTATGTCTTGCTGCAGCATTTAagcaaataaatcaatattgtgCCTGTTAAAGTGTCATTCAGGAGTATCTTTGTCTTTTTTGCTGCTGTGTTATGAGAGAAGAGAGATGTTGATCATGTATTCAACATGCCTTGTCAGTTTGCACTTTTATTGTGGCTATTTGTAGCTTTTTCGTCATTCTGCCGCTTTTTTAGATGTTATTAATGCTGTGCTTTGTACACTTGGAAATGGGAAAATCGGTCACTAGTGATTATTGTTGGTCTTGTAGCCCACTGGTATTCAGGTCACCCCCTATCTCCTTCTGTGTAtgactatgttttttttcatgtattgtATACCTTGCTGCAAAACCAATTGCCCAAAACCAATAAAGTTGAAAGTTGCTGTCTTATGTGTTAACAATTCGATATATCATACTTTTTAGTGCACTtttgaaaatattactgaaaatctGTAAAGGATTGCCGATGACAAATCGCCACCAATTGTGACTTTTCAATTGGATTCATACGTTTTGTGGATGATCAGCCAATAACTGTTTCAACAGTGCATGCAAAGTTTCGATTTCTTGATCTTGCGTCCCTATTCGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5258 True 1851 lncRNA 0.38 1 12435552 12437402

Neighbor

gene id symbol gene type direction distance location
LOC120565820 cuta,LOC103356700,LOC102777976 coding downstream 106916 12320596 ~ 12328636 (-)
LOC120567055 NA coding downstream 132421 12300865 ~ 12303131 (-)
LOC120562870 NA coding downstream 158468 12274686 ~ 12277084 (-)
LOC120562891 NA coding downstream 194462 12237418 ~ 12241090 (-)
LOC120562884 NA coding downstream 213374 12217613 ~ 12222178 (-)
ift27 ift27,LOC102778458 coding upstream 2540 12439942 ~ 12453356 (-)
LOC120543530 tmprss6 coding upstream 251526 12688928 ~ 12703781 (-)
LOC120561143 NA coding upstream 266780 12704182 ~ 12720442 (-)
LOC120561165 NA coding upstream 290499 12727901 ~ 12751429 (-)
LOC120565245 mpst,LOC102779789 coding upstream 314960 12752362 ~ 12755136 (-)
G3821 NA non-coding downstream 6909 12428320 ~ 12428643 (-)
G3783 NA non-coding downstream 171546 12215455 ~ 12264006 (-)
G3781 NA non-coding downstream 179749 12207348 ~ 12255803 (-)
G3780 NA non-coding downstream 183712 12206851 ~ 12251840 (-)
G3747 NA non-coding downstream 261770 12171287 ~ 12173782 (-)
G3847 NA non-coding upstream 29430 12466832 ~ 12496094 (-)
LOC120558164 NA non-coding upstream 76005 12513407 ~ 12515106 (-)
G3857 NA non-coding upstream 118545 12555947 ~ 12616154 (-)
G3858 mgat3,LOC103374702,LOC103375514 non-coding upstream 164888 12602290 ~ 12607359 (-)
G3914 NA non-coding upstream 250439 12687841 ~ 12688294 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other downstream 1442351 10966362 ~ 10993201 (-)
G3586 LOC104950333 other downstream 1530317 10899558 ~ 10905235 (-)
LOC120559237 LOC103359075 other downstream 2224248 9858080 ~ 10211304 (-)
G3373 LOC103359075 other downstream 2393548 9840590 ~ 10042004 (-)
LOC120559295 LOC102079284,LOC103374337,LOC105417663,LOC102799559,LOC102201385,LOC102294705,LOC101477163 other downstream 2867707 9525261 ~ 9567845 (-)
c1qtnf6b c1qtnf6,LOC103374348 other upstream 204611 12642013 ~ 12659983 (-)
LOC120561813 NA other upstream 367100 12804502 ~ 12832356 (-)
trnac-gca NA other upstream 422882 12860284 ~ 12860355 (-)
trnac-gca_1 NA other upstream 424292 12861694 ~ 12861765 (-)
trnac-gca_2 NA other upstream 425128 12862530 ~ 12862601 (-)

Expression


Co-expression Network