c1qtnf6b (c1qtnf6,LOC103374348)


Basic Information

Item Value
gene id c1qtnf6b
gene name c1qtnf6,LOC103374348
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12642013 ~ 12659983 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU5319
CTCATTCTGACAACAGCAGCCGTTCCCCCCCTGCTCCGCTGTGCCGAGACTCCACCAGGTTGTGACAGCCATGTTGGCGGTGTGTTTGAGGCTGCTTTTGCTCCTCCCCCTGGCTTGCTgtgtcccctccccctccagaCCTCCTTCCAGAGTCTGTAGACGGTGCTGCGACCACCTGGAGCCGCCAGCAGCCACGGGGCAATATCAGCTGCCTGAGGTCCGCACTGTCATCAACATGACCATCCTCAAAGGTGATAAAGGAGACAGAGGCGACAAGGGTACACCTGGGAAACCCGGCTTAGAGGGCCCCCCCGGCGTCCGAGGACCCATGGGCCCTAAAGGCACCAAAGGCCAGGCGGGCTCCCCCGGAGACGCCTGCAAGATCCCTCACTCCTCCTTCTCGGTGGGACGCCGCAAGTCCCTGCACAGCGTGGACTACTACCAGGCGCTGGTGTTCGACACGGTGTTCGTCAACCTCCACGGCCACTTCAACATGTTCAAAGGCAAGTTCTACTGCTACGTGCCGGGGATCTACTTCTTCAACATTAACATCCACACCTGGAACTTTAAGGAGACCTACCTCCACCTGATGCACAACGACAAGGAGCAGGTGATCCTGTACGCTCAGCCCAGCGAGAGGTCCATCATGCAGAGCCAGAGCGTCATGATGGACCTGGCTCTGAATGACGAGGTCTGGGTGCGACTCTacaagagggagagggagaacgCCATTTACAGTGACGACGTGGATGT
>XM_039805464.1
ttcTCCTCAGTAGTTCGCTCTCTCATTCTGACAACAGCAGCCGTTCCCCCCCTGCTCCGCTGTGCCGAGACTCCACCAGGTTGTGACAGCCATGTTGGCGGTGTGTTTGAGGCTGCTTTTGCTCCTCCCCCTGGCTTGCTgtgtcccctccccctccagaCCTCCTTCCAGAGTCTGTAGACGGTGCTGCGACCACCTGGAGCCGCCAGCAGCCACGGGGCAATATCAGCTGCCTGAGGTCCGCACTGTCATCAACATGACCATCCTCAAAGGTGATAAAGGAGACAGAGGCGACAAGGGTACACCTGGGAAACCCGGCTTAGAGGGCCCCCCCGGCGTCCGAGGACCCATGGGCCCTAAAGGCACCAAAGGCCAGGCGGGCTCCCCCGGAGACGCCTGCAAGATCCCTCACTCCTCCTTCTCGGTGGGACGCCGCAAGTCCCTGCACAGCGTGGACTACTACCAGGCGCTGGTGTTCGACACGGTGTTCGTCAACCTCCACGGCCACTTCAACATGTTCAAAGGCAAGTTCTACTGCTACGTGCCGGGGATCTACTTCTTCAACATTAACATCCACACCTGGAACTTTAAGGAGACCTACCTCCACCTGATGCACAACGACAAGGAGCAGGTGATCCTGTACGCTCAGCCCAGCGAGAGGTCCATCATGCAGAGCCAGAGCGTCATGATGGACCTGGCTCTGAATGACGAGGTCTGGGTGCGACTCTacaagagggagagggagaacgCCATTTACAGTGACGACGTGGATGTTTACATCACTTTCAATGGATACCTCTTGGCTCCTAGcatccagtaaaaaaaaaaaaaaaaaaaagaaaaaaaaggggagggagtagggctgggtaccgaattcaatactttttaggcaacgaccgaattgcctctgaaGTATGGAGTATCGAAAAacgcctcgtcattcaatagcCAATTTCAatatctcatcagcgtcagtgagccatcAGCTTGCCGCATGGTTCTACCAAGATCTGATAATGTTGGTGATTTCTAA

Function

symbol description
c1qtnf6 Predicted to enable identical protein binding activity. Predicted to be located in extracellular space. Predicted to be integral component of membrane. Predicted to be part of protein-containing complex.

NR:

description
PREDICTED: complement C1q tumor necrosis factor-related protein 1-like

GO: NA

KEGG:

id description
K19470 C1QTNF1_6_8; complement C1q tumor necrosis factor-related protein 1/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
TU5319 False 753 TUCP 0.46 3 12642272 12659962
XM_039805464.1 True 1033 mRNA 0.54 3 12642013 12659983

Neighbor

gene id symbol gene type direction distance location
ift27 ift27,LOC102778458 coding downstream 188657 12439942 ~ 12453356 (-)
LOC120565820 cuta,LOC103356700,LOC102777976 coding downstream 313377 12320596 ~ 12328636 (-)
LOC120567055 NA coding downstream 338882 12300865 ~ 12303131 (-)
LOC120562870 NA coding downstream 364929 12274686 ~ 12277084 (-)
LOC120562891 NA coding downstream 400923 12237418 ~ 12241090 (-)
LOC120543530 tmprss6 coding upstream 28945 12688928 ~ 12703781 (-)
LOC120561143 NA coding upstream 44199 12704182 ~ 12720442 (-)
LOC120561165 NA coding upstream 67918 12727901 ~ 12751429 (-)
LOC120565245 mpst,LOC102779789 coding upstream 92379 12752362 ~ 12755136 (-)
LOC120565993 LOC103371372,LOC104925466 coding upstream 139425 12799408 ~ 12802826 (-)
G3857 NA non-coding downstream 25859 12555947 ~ 12616154 (-)
G3858 mgat3,LOC103374702,LOC103375514 non-coding downstream 34654 12602290 ~ 12607359 (-)
LOC120558164 NA non-coding downstream 126907 12513407 ~ 12515106 (-)
G3847 NA non-coding downstream 145919 12466832 ~ 12496094 (-)
G3828 NA non-coding downstream 204611 12435552 ~ 12437402 (-)
G3914 NA non-coding upstream 27858 12687841 ~ 12688294 (-)
G3915 NA non-coding upstream 28458 12688441 ~ 12688811 (-)
G3926 NA non-coding upstream 91772 12751755 ~ 12751976 (-)
G3929 rps19bp1,LOC102787703 non-coding upstream 96492 12756475 ~ 12759089 (-)
LOC120555888 NA non-coding upstream 103464 12763447 ~ 12767103 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other downstream 1648812 10966362 ~ 10993201 (-)
G3586 LOC104950333 other downstream 1736778 10899558 ~ 10905235 (-)
LOC120559237 LOC103359075 other downstream 2430709 9858080 ~ 10211304 (-)
G3373 LOC103359075 other downstream 2600009 9840590 ~ 10042004 (-)
G3312 LOC103374337,LOC102079284,LOC102799559,LOC102201385,LOC101477163,LOC105417663,LOC102294705,LOC105931228,LOC103374338,LOC104930029,LOC108246298,LOC103154480,LOC107382397 other downstream 3001499 9508604 ~ 9640514 (-)
LOC120561813 NA other upstream 144519 12804502 ~ 12832356 (-)
trnac-gca NA other upstream 200301 12860284 ~ 12860355 (-)
trnac-gca_1 NA other upstream 201711 12861694 ~ 12861765 (-)
trnac-gca_2 NA other upstream 202547 12862530 ~ 12862601 (-)
trnac-gca_3 NA other upstream 205985 12865968 ~ 12866039 (-)

Expression


Co-expression Network