LOC120561813


Basic Information

Item Value
gene id LOC120561813
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 12804502 ~ 12832356 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU5400
caattttCTTCAGGttacataaacaaaacaaaaacaacaatacaacgacaatagaataaaatacaaGCAACAGAGTGATCGTAAAAACACCGGAGGATagaataaaggtaaaaaaatatataaaatggcCAGGGAGGGATGATAAAACCCAGCCCAGGGCACACTGGGGGTCAATAAATCCTTGATATAATTTGGAGCAAGGCCATTTCATTCTTTAAAAGTCATCAGTAAAATAGAATGGAAGTAATGTGTTGCTTTCTCTTGGTGCCTGTTCATATTGATGCGGCGGCGTTCTGCACCAGGTAGAGCCGGTGAAGGGACGCGTTATTTACTGAGCGGGCCGCGGCGGCTCATTCCAACATATCAGAAAGTACATTTGCAATGTGTGCTATTTAAGTTGAATTCAACGTTGTGGTCTGAGGTGCGTTCAGGACCAGATGCTACTGAAAAGATGTTTAGCGTTGAGTAATGGCACTCCTGTGTGTCGTGTTTTGGATTGCTTAATGTTAAAGTGACAGAAATCATAGATCGAGTTTTTTGTGCACACTTGGCTTTGAATACATGTACAGAATGAAGTGTAAAATATGTTTCTAAAAACCAAAAAGTATCTAGTAAAACCATTTGGGAGCATAATAGTTTTGGAAACTTTATGCTTTCAGTTATGTGAGAGTGCCACGGAAtaatttttaactttttgttaGTATTAATTATTACTATTTATCAGGTTTTTTTCTGCTTCGCATTAGTGCAGCGCACAAACCTACCCAGGAGCTCCTTACTGAAGTTACATTACTTTATACCAGTTGAGTGTTAAGCGCCTTTCTTCATGGTACTCTGACAAATGAAAAGGAAAGACAGtatttttaaccctcctgtttgacccattttgacccattttcaaaaagtttctatatcagaaatttgggtttctttcaaccaaatggtcaaaaaaaaaaaaaaaaaaaacgtaacgtGGACTGTTCCATCCAGCCATTACTCTTTATAattcaaataaatgatcagttcactactttcattgaatttgggtgtgtTATTCAATTGTATAgcgtttgaaaaaaatataaaaatgatcaAAGAATGttgggaaaaagtgacaaaaaagtttgggaaaaaaaacaagaaaaaggtaaaaaaaaaatttaaaaaagtgcagaaaaatcAGCAAAAACATCGACAATAACATCCAAaatttgtgacaaaaaaattggaaaaaaagtaaccaaaaaaagtgacaaaaacatcgggaaaaagGTGACgaaattttttgaaaaaagtgacaaaaacttaaaaaaaaataaataaaaaattgcatggtcgatgggaagacaacacaagggttaaatgaacTTACTGACCCTGGTTGTGAGCTTGCACCTCAAAGTTTCAACACATTTGATAAAGTGACATTAATtaggtttttcttttgttttttttaaacgtcgCTATGATATGTCCATTTTTTGGCCACATAATTAATTGCAATATTTAATATCTTTACAATACATGGATCTAGTTTGGGAAGTTTTCAGTCATACATGTTAGTTTCCTGCTATCTGAAATGATTGAAACAACTGTTTGTCATGACTGATGGGATGTACCATCCTTTGAACAATTGGTAGAAATTATACCGAGGGCAgcagtgaatgtttttttttttttaaatccgtGTTTGATTTGATATTCCAACGAAAGATAAAATATGCAGCTTTGTaaagtttcttttgttttctctttttagcAAGTTTGAACTCTTTTATTACCGGTACTTGAATACTTGAAAACCTCTTTTTCTAACCTCTTTGAAAGACGTCATGTTGACTTCATGACTTTCTACTTCCTTGTACATAACACTTTGATTTTGTATGagaaagaatgttttttttgttttttgtttttttcatttgtagAATGGGACTATTCTGGGTTATGAATTAATAACACGTGAATTTGATGAATGAGTAGCTGCTTGGAttccaaacaacagacaaactgtGTACGTCTGTGTCATTCAGTCATTTCTCATGTATTCTATTCGTTTGTTGAGATGGTGGAGagaatattataattattattatctaaTTATGAAGTGCACTAGAGGTGAATCCAGGTCAAGTCCATCATTTAAATATGTTCTAGTCTTAAAGGACATGGGACaaggaaaagagagacagaggaggctTTCTGTGTTTTCAGACAATTGTGATTTGGATCCTAACAAATTCAGTATcacaaattatttattatatatttctatattttgaTACAATGTTTGCAGGCTACATACTTCTCTAATCTTAGTGCAGCATGTAGTTAATACAAGAACTGATGTAGTTCTAATGCTTGATTATGTGTTACCATAAATTAGGAGCGCTTATAAATCTTTTAGAACCTCCTCTTGGTGGAAGCGCTTTTATGTAATCCAGTGGTTCTCATATTGGGGTCCccaaCAAAATCTAGAATGATCTATTTTCGGTTACACcttcaagtaaagtgtttccctattttcactataatttcatccataagtaacacaatgacagattgTATGACTATTTTGCTCATGGATTTCATTCACTTTCTGCTGCGTGTCCTGTAGTAAAACATCTAAATGCAAAAATTCTATCAGGTAGGGGACCCTGGGACAAAGTCTTATCAGGTGGGGgtccgtggtctaatttgtgtcagtttaggggtccttgacgtgaaaaagtttgagaaccactgatgtCATACATTGAATTCAAACTTGATTGACTTTTGAGATGCAGATTAGGGTCAAATATGTTATTGGACACAGTACAATGTATAATGTCTCATGGAtttggagaaaataaaaaaacaacacttatgTTTCTTTCACTTGTATTACCTAAAAGAGGCGACacgtttcattttcatttcagaaaTTTGATGAACAGCCTGTACAGTCCTGAAGCTGTATCTTTGTGTATACGTGCTCTTTCTGGAACACACAATACAGGCAGTTTAATTCTCTCAGATTCCTGTTAGTGTGAAGCTGTACAAGCAACGCTGACGACAATGGTTAAATGCATCCCAGTTAATCAGGTTCAGCTTCTCCACGCACATCTGATAATGTATGTACTCTAACTTAAACAATACATTCAGACATGACCATTGTTGCcaattgttttctcttttaattaaactgattgATGTGTCAGAATTGGCCTGAGGTGTTCTCCAGAGTATTTGACTACCAATGCCTATTTGTAAGCCCAACTGAATGTTGGatttattcaataaaatattgttatgtatttttg
>XM_039805083.1
AAAACCTCCGAGCTGTCAAAAGCGTCGTCATGTCCCGTAGGAGTTCTCGCCTGGTGTCCGGCGGCTACTATAATTCAGACGAAGAATCGGATTCGAGTAGCGTGACAAACATATCTTACCGCGAAAACCCTGTCAAGGTTTTCAAGAAGAAGGCGGGGACCCGCAAAGCCGGCTCCCGTACCCCCACTAGAACCAATAGCAATGCGAGTTCTGCCAGCCCCGAGCCGCCCATCGCTGCAGGCCAGTATGACGGCCCCAGTTTTTCTTCCTTGAGCAGCCAGACCCAGCCGATCACGAGGGCGGTGCCCAACATCTCCACCACACCTACCCCTCGGCCACCCCTGACCCCATCATCAACCCGGAGCCAGACACCCCCATGCTGCCCCTCGGTACCTCCAGAGAAGAGCCCCTACGCTGGGCTCTGCAGCTCCAGCAGGCCAGGGTTACACCTCCAACCCAACCACAAGGAGCTGAGTCAGAGCGCTGTGGACAGCTCAGGGTACTCCTCCTCTGAGGGCCCTCACAGGAAGCCCACAGCCGCCACCGCCAGCAGCAGTGACAGTAGAATCAGCAGTAATAGTGGGGCTCCCAGTATTGGATACAGAGTCAGACGTGCCTTCTTTGGTCTAATGGACTCCGTCTCATTGATGGCCGCTGCATTACAGTCAAAAATAAtgcatctgacagctttagCTAATACTTCAGTCAGCGGTCGCATGAAGAAGGCTTGTGGTctgtttctcctcctcctcctcatcgtACTTTTATGTATTTGGTTCCTCCTTCCTTTGTTGACCTCCTACATCTCCCGCATGGCTGTCACAAAGACCCTGTCACAAACTAAACCCAAGAGTCAACCTGTTTCTCCTGccgctcctcctcctcaatCCAATATCATACATTCTACACCCGTGGTGGATCCAGCCGTCGTGTCTGCTGCTGTAGATGCGAGGATAGAACAATTTTTGGATTCAGCCGTTGTGTCTGCTGCTGTAGAAGCAAAGATGCATCGTCTTTTGgaggagcagcagctgaAGCAGGAACACATTCTCTCTCAGaTGAAGGAGAGACTACATCTGGACATGCAGGATGTGAAAGCCAAGCTGGAGGTTGTGGACTCGGAGAGTCGGCTGCGTCTGGAGCAGGAGGTTTATGGGTTGGGCAGGCAAATGGTGGATTACCAGACAGACAGCCACTCGGCCGCTGCCAGCCTCAGGCTCAGGATCCAAGCTTTAGAGTCCCAGAATGCAAAGCTGTCCCAGGAGTGGTCGTCCATCCAGCTGATGCCTCCTCCTGCCCCCTGTCCTGAGACCAGCACCACCCCCGTCCAAAACCATCTCACCCCAGAGCTCCAACAGGCCATGGAGAAGTGGCTCACTGAGCGCATCAAGGAGCAGGATGCTATCAGGCTTGGTGACAAAGGAGCTTCCTCCGACTGTGGACGTCCCATGGCTGACAAAATGGCCGACTTTGCATTGGAGACGCAAGGTGCCAGTGTGATCAGTACCAGGTGTTCAGAGACCTATCGTATTCGTTCAGCATGCGTGACCCTGTTTGGATTCCCTCTGTGGTACCCATCTGAAAGCCCACGCACTGTTATTCAGGGCTACCCGGTGCTGCTCCCAGGGAAATGTTGGGCATTCCACGGTGTCGAGGGGACTCTTgtcatctctctgtctcacccCATCACTATAACTCACGTGACACTGGACCACCTGCCGCGCTACAACTCCCCCACCGGCCGCATCGACTCCTCCCCCAAAGACTTTGAAGTCTATGGAATGAGAAATGACACAGAGGAAGGAACACTGCTGGGGACATTCACTTACGATGTAAATGGAGAGCCTACGCAAACATTCAAGCTGCCAAAACCCAGTGACGTGGTGTATCGAGTTGTGGAGCTGCGTGTCCTCAGTAACTGGGGACATGTTGAATACACGTGCCTCTATCGCTTCCGTGTGCACGGACAGATCGCCTCCACATTGTaattcatttttatatatatatatatatatatatatatatatatatatatagcaattttCTTCAGGttacataaacaaaacaaaaacaacaatacaacgacaatagaataaaatacaaGCAACAGAGTGATCGTAAAAACACCGGAGGATagaataaaggtaaaaaaatatataaaatggcCAGGGAGGGATGATAAAACCCAGCCCAGGGCACACTGGGGGTCAATAAATCCTTGATATAATTTGGAGCAAGGCCATTTCATTCTTTAAAAGTCATCAGTAAAATAGAATGGAAGTAATGTGTTGCTTTCTCTTGGTGCCTGTTCATATTGATGCGGCGGCGTTCTGCACCAGGTAGAGCCGGTGAAGGGACGCGTTATTTACTGAGCGGGCCGCGGCGGCTCATTCCAACATATCAGAAAGTACATTTGCAATGTGTGCTATTTAAGTTGAATTCAACGTTGTGGTCTGAGGTGCGTTCAGGACCAGATGCTACTGAAAAGATGTTTAGCGTTGAGTAATGGCACTCCTGTGTGTCGTGTTTTGGATTGCTTAATGTTAAAGTGACAGAAATCATAGATCGAGTTTTTTGTGCACACTTGGCTTTGAATACATGTACAGAATGAAGTGTAAAATATGTTTCTAAAAACCAAAAAGTATCTAGTAAAACCATTTGGGAGCATAATAGTTTTGGAAACTTTATGCTTTCAGTTATGTGAGAGTGCCACGGAAtaatttttaactttttgttaGTATTAATTATTACTATTTATCAGGTTTTTTTCTGCTTCGCATTAGTGCAGCGCACAAACCTACCCAGGAGCTCCTTACTGAAGTTACATTACTTTATACCAGTTGAGTGTTAAGCGCCTTTCTTCATGGTACTCTGACAAATGAAAAGGAAAGACAGtatttttaaccctcctgtttgacccattttgacccattttcaaaaagtttctatatcagaaatttgggtttctttcaaccaaatggtcaaaaaaaaaaaaaaaaaaaacgtaacgtGGACTGTTCCATCCAGCCATTACTCTTTATAattcaaataaatgatcagttcactactttcattgaatttgggtgtgtTATTCAATTGTATAgcgtttgaaaaaaatataaaaatgatcaAAGAATGttgggaaaaagtgacaaaaaagtttgggaaaaaaaacaagaaaaaggtaaaaaaaaaatttaaaaaagtgcagaaaaatcAGCAAAAACATCGACAATAACATCCAAaatttgtgacaaaaaaattggaaaaaaagtaaccaaaaaaagtgacaaaaacatcgggaaaaagGTGACgaaattttttgaaaaaagtgacaaaaacttaaaaaaaaataaataaaaaattgcatggtcgatgggaagacaacacaagggttaaatgaacTTACTGACCCTGGTTGTGAGCTTGCACCTCAAAGTTTCAACACATTTGATAAAGTGACATTAATtaggtttttcttttgttttttttaaacgtcgCTATGATATGTCCATTTTTTGGCCACATAATTAATTGCAATATTTAATATCTTTACAATACATGGATCTAGTTTGGGAAGTTTTCAGTCATACATGTTAGTTTCCTGCTATCTGAAATGATTGAAACAACTGTTTGTCATGACTGATGGGATGTACCATCCTTTGAACAATTGGTAGAAATTATACCGAGGGCAgcagtgaatgtttttttttttttaaatccgtGTTTGATTTGATATTCCAACGAAAGATAAAATATGCAGCTTTGTaaagtttcttttgttttctctttttagcAAGTTTGAACTCTTTTATTACCGGTACTTGAATACTTGAAAACCTCTTTTTCTAACCTCTTTGAAAGACGTCATGTTGACTTCATGACTTTCTACTTCCTTGTACATAACACTTTGATTTTGTATGagaaagaatgttttttttgttttttgtttttttcatttgtagAATGGGACTATTCTGGGTTATGAATTAATAACACGTGAATTTGATGAATGAGTAGCTGCTTGGAttccaaacaacagacaaactgtGTACGTCTGTGTCATTCAGTCATTTCTCATGTATTCTATTCGTTTGTTGAGATGGTGGAGagaatattataattattattatctaaTTATGAAGTGCACTAGAGGTGAATCCAGGTCAAGTCCATCATTTAAATATGTTCTAGTCTTAAAGGACATGGGACaaggaaaagagagacagaggaggctTTCTGTGTTTTCAGACAATTGTGATTTGGATCCTAACAAATTCAGTATcacaaattatttattatatatttctatattttgaTACAATGTTTGCAGGCTACATACTTCTCTAATCTTAGTGCAGCATGTAGTTAATACAAGAACTGATGTAGTTCTAATGCTTGATTATGTGTTACCATAAATTAGGAGCGCTTATAAATCTTTTAGAACCTCCTCTTGGTGGAAGCGCTTTTATGTAATCCAGTGGTTCTCATATTGGGGTCCGGGGACCCCCAGGGGTCTTTGAAGTggttccagggggtccccaaCAAAATCTAGAATGATCTATTTTCGGTTACACtttcacttgaaggtatctacacaACAGTgacatgtcactcttatgtagataccttcaagtaaagtgtttccctattttcactataatttcatccataagtaacacaatgacagattgTATGACTATTTTGCTCATGGATTTCATTCACTTTCTGCTGCGTGTCCTGTAGTAAAACATCTAAATGCAAAAATTCTATCAGGTAGGGGACCCTGGGACAAAGTCTTATCAGGTGGGGgtccgtggtctaatttgtgtcagtttaggggtccttgacgtgaaaaagtttgagaaccactgatgtCATACATTGAATTCAAACTTGATTGACTTTTGAGATGCAGATTAGGGTCAAATATGTTATTGGACACAGTACAATGTATAATGTCTCATGGAtttggagaaaataaaaaaacaacacttatgTTTCTTTCACTTGTATTACCTAAAAGAGGCGACacgtttcattttcatttcagaaaTTTGATGAACAGCCTGTACAGTCCTGAAGCTGTATCTTTGTGTATACGTGCTCTTTCTGGAACACACAATACAGGCAGTTTAATTCTCTCAGATTCCTGTTAGTGTGAAGCTGTACAAGCAACGCTGACGACAATGGTTAAATGCATCCCAGTTAATCAGGTTCAGCTTCTCCACGCACATCTGATAATGTATGTACTCTAACTTAAACAATACATTCAGACATGACCATTGTTGCcaattgttttctcttttaattaaactgattgATGTGTCAGAATTGGCCTGAGGTGTTCTCCAGAGTATTTGACTACCAATGCCTATTTGTAAGCCCAACTGAATGTTGGatttattcaataaaatattgttatgta

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU5400 False 3305 lncRNA 0.43 3 12804502 12807898
XM_039805083.1 True 5428 mRNA 0.42 17 12804508 12832356

Neighbor

gene id symbol gene type direction distance location
LOC120565993 LOC103371372,LOC104925466 coding downstream 1676 12799408 ~ 12802826 (-)
LOC120565245 mpst,LOC102779789 coding downstream 49366 12752362 ~ 12755136 (-)
LOC120561165 NA coding downstream 53073 12727901 ~ 12751429 (-)
LOC120561143 NA coding downstream 84060 12704182 ~ 12720442 (-)
LOC120543530 tmprss6 coding downstream 100721 12688928 ~ 12703781 (-)
ncf4 ncf4 coding upstream 97776 12930132 ~ 12962722 (-)
baiap2l2b baiap2l2,LOC102782181,LOC102312770 coding upstream 145195 12977551 ~ 12989241 (-)
LOC120560412 NA coding upstream 159833 12992189 ~ 13019563 (-)
cbx6a NA coding upstream 211896 13044252 ~ 13068047 (-)
LOC120564587 NA coding upstream 266543 13098899 ~ 13115142 (-)
G3940 NA non-coding downstream 5271 12798811 ~ 12799231 (-)
G3935 NA non-coding downstream 19601 12783201 ~ 12784901 (-)
LOC120555888 NA non-coding downstream 37399 12763447 ~ 12767103 (-)
G3929 rps19bp1,LOC102787703 non-coding downstream 45413 12756475 ~ 12759089 (-)
G3926 NA non-coding downstream 52526 12751755 ~ 12751976 (-)
G3995 NA non-coding upstream 226490 13058846 ~ 13065061 (-)
G4032 NA non-coding upstream 256836 13089192 ~ 13157217 (-)
LOC120567932 NA non-coding upstream 305702 13138058 ~ 13151623 (-)
LOC120567935 NA non-coding upstream 319364 13151720 ~ 13152846 (-)
G4066 NA non-coding upstream 362690 13195046 ~ 13272174 (-)
c1qtnf6b c1qtnf6,LOC103374348 other downstream 144519 12642013 ~ 12659983 (-)
nacc1b nacc1,LOC106946817,LOC106922850 other downstream 1811301 10966362 ~ 10993201 (-)
G3586 LOC104950333 other downstream 1899267 10899558 ~ 10905235 (-)
LOC120559237 LOC103359075 other downstream 2593198 9858080 ~ 10211304 (-)
G3373 LOC103359075 other downstream 2762498 9840590 ~ 10042004 (-)
trnac-gca NA other upstream 27928 12860284 ~ 12860355 (-)
trnac-gca_1 NA other upstream 29338 12861694 ~ 12861765 (-)
trnac-gca_2 NA other upstream 30174 12862530 ~ 12862601 (-)
trnac-gca_3 NA other upstream 33612 12865968 ~ 12866039 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other upstream 158208 12990564 ~ 13028393 (-)

Expression


Co-expression Network