LOC120558581


Basic Information

Item Value
gene id LOC120558581
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14067848 ~ 14071547 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU5970
CACGCACGGAAGTAAGGAGGAAAACACACGTAGCTCTGAAATTAAGAGGCTCTATAAACGGGATAATTAAGCACCTAGCTGGAACGGGAACAAGatgccACGGAAGTCAACTGCAGAAAGGTCTCAGTCCTATAGGGACAGACTAAAAGAGGACCCTGTCAAATAGGAAGAGCGACTGAAGAGAGacagggaaaaaagaaagaggggttGTAAAGCCAATTGCAGATTTGTCAAAGCGAGAACAACGAAAAGAAGGAGACAATGGAGAACCAATCAAAAAAATTATCGGAAGAAGATGAACAAAGCTATTAAGGTACAGGCCTACCTTTCTACCACTACACCACCAAACTCTGTGCAGCCAGAACATGATGTCGATCCACCTCACCATCACCCTCTGCCCAACCTTTAAGTCAAAAACAAAGGGGAAGGAAAAAGGAGGCCGAGAGGTACCGCAAATGGTATGAccaattaaagtgatggttcggagtaatttcaccctagggtcctttgcaccatgacctcgagccaaacacccccccagaagcttttttcacctgggtctaacattgggagagttagcgtagagtagcgttatcagctgaatagcttagtgcaggggctaatggacccacgtttgtatctcgtaaatgaccccactaataatgcccgaaatcaTACCAAATGTCTACACTAGtaaaaataggttat
>XR_005639154.1
CTCTTATACAGGCTTAGGGAAGGTAATTTTCAGTTAAAATCATTCGTGCCTAATACAGACTGTGTACCATTATATTATTCACTCATGATTGGTGGGAGTGTAACTGACTCTAAGGAAGGTGTATTAATAAGGTAACAACTTCAgagctttattttattattttcctcTCTTCATATTATAAGTCCTTTTATTCTAGCGCCTCCTAGCGGAACGTTAATCTTGCATCTAAAGGGAGAGGGGGGGACTAGTTTTGTGAGACACACGCACGGAAGTAAGGAGGAAAACACACGTAGCTCTGAAATTAAGAGGCTCTATAAACGGGATAATTAAGCACCTAGCTGGAACGGGAACAAGCTCTTACGGTGTTTCATGAAGAAACGGAAGGTATATTTGTGTTCAGAACAAGGCTGACGGCTGAACGTAAATAAAAGCTTCTGGAAACATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU5970 True 708 lncRNA 0.44 2 14067848 14071287
XR_005639154.1 False 446 lncRNA 0.40 2 14070847 14071547

Neighbor

gene id symbol gene type direction distance location
LOC120558573 NA coding downstream 7951 14056622 ~ 14059897 (-)
cdc37 LOC103374849 coding downstream 16096 14044322 ~ 14051752 (-)
LOC120567316 NA coding downstream 84218 13959135 ~ 13983630 (-)
LOC120558259 NA coding downstream 108877 13948209 ~ 13958971 (-)
LOC120567288 LOC103136441,LOC106959223 coding downstream 132160 13901386 ~ 13935688 (-)
LOC120558590 NA coding upstream 21738 14093285 ~ 14095869 (-)
LOC120558598 NA coding upstream 55918 14127465 ~ 14132932 (-)
LOC120558610 NA coding upstream 69768 14141315 ~ 14146842 (-)
LOC120567413 LOC104965219 coding upstream 78782 14150329 ~ 14179046 (-)
LOC120557653 LOC103366227,LOC103383461 coding upstream 109603 14181150 ~ 14203254 (-)
G4359 NA non-coding downstream 11391 14055443 ~ 14056457 (-)
G4354 NA non-coding downstream 22129 14045360 ~ 14045719 (-)
LOC120558530 NA non-coding downstream 299992 13765193 ~ 13767856 (-)
LOC120558524 NA non-coding downstream 531600 13520001 ~ 13536248 (-)
G4115 LOC101079010,LOC105939483,LOC106946826,LOC103153258,LOC106910155 non-coding downstream 575851 13487920 ~ 13491997 (-)
LOC120558586 NA non-coding upstream 6770 14078317 ~ 14078999 (-)
LOC120558606 NA non-coding upstream 34404 14105951 ~ 14108693 (-)
G4443 NA non-coding upstream 225542 14297089 ~ 14297452 (-)
G4450 NA non-coding upstream 367909 14439456 ~ 14439663 (-)
G4566 NA non-coding upstream 779414 14850961 ~ 14852833 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 25338 14018902 ~ 14042510 (-)
G4168 NA other downstream 500582 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 1027568 13037270 ~ 13040280 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other downstream 1039455 12990564 ~ 13028393 (-)
trnac-gca_3 NA other downstream 1201809 12865968 ~ 12866039 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other upstream 640597 14712144 ~ 14719102 (-)
ubl5 ubl5 other upstream 829599 14901146 ~ 14904229 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 1354997 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 2274171 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 3340506 17412053 ~ 17421098 (-)

Expression


Co-expression Network