LOC120566920


Basic Information

Item Value
gene id LOC120566920
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 1609532 ~ 1675981 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU602
gaaagttttaaaactccaaacacaGGCTCTATCAGCCCGGGAGTTTGGGGAACAGCCGACTGTTTTCCTGtaacaacaaagcactcgctATATCTCgctcatctcttttctttctctctttctccgggaaataaagctgccttcaagttcAGTCGGAAATGTCGAGATCTATAAAccatctgacagaaaacagtgtgaaatataaagtgtacttgtgctacattgggaaGTCACACAAACAGGCTGTTTCAGTGACACTCCCACTGCTGCACAACTCTGCCAAAAATCTGCAGATCACTTTCTTTGGTCTGAACGCAGCTTAAATTCTATTACATGTCtatagttgtctacagaacacaatATGAGTCATAACACCAGTATGAAAGGTTATTACATGTTtatagtgtctacagaacacaatATGAGTCGTTATTACACCGGGTATAAAAGGTTATTACATGTCtatagtgtctacagaacaca
>TU613
TTGTGGGTAAGATGGTTTATAAGTCAAAGAAATCTGTAGGGAAGTTAGATATTGTCCACATAACGTGTGTCATGATGCATCAAATTAATGTGTTGATGAATTATGATTAGAAACAAAGCAATTACAAATATCCACAAATGgagataaaaaatgtttttttttctcattttaaatatctaaaattaaaattaaaggtTAAGTGCAAATCTGATGGAACAATTAGGATCTAACAGGTATATGCGGTAAATTGGTTGTCtgatattttatttgttatattCCTCATTAATGAGACAGGAAAGAAAAAGTCTGAATTATTGTGGCATAATTGCAGAATTAAAGAATGTTAATGGTGTTATTCCTAAATCAGTTCTTCTGATATCACTTTAAACTGCTGGTTTTGGTCTTTCTACCACAACAGTTGCACCTTTACTTTTAAATGTAAGCCACATTCCTATTTGGAGAACCTGCTGTTGAACTTATGATGAAATTGATAATTTCAAGTGTTTAGACATAATggttaaccctcatgttgtcctcgggtccatTTTCTAAAAGTAAGTTATataagaaatttgggtttctatcaaccaaaatgtccaaaata
>XR_005640491.1
CTATCAGCCCGGGAGTTTGGGGAACAGCCGACTGTTTTCCTGtaacaacaaagcactcgctATATCTCgctcatctcttttctttctctctttctccgggaaataaagctgccttcaagttcAGTCGGAAATGTCGAGATCTATAAAccatctgacagaaaacagtgagtgtgaaatataaagtgtacttgtgctacattgggaaGTCACACAAACAGGCTGTTTCAGTGACACTCCCACCGCTGCACAAACTCTGCCAAAAATGTGCAGATCActttctttggtctgaactcagCTTAAGGTCTATTACATGTCtatagtgtctacagaacacaatATGAGTCATTATTATACCGGGTATAAAAGGTTATTACATGTCtatagtgtctacagaacacaatATGTGTTGTTATTATACCAGGTATAAAAGGTTAATGAATGTTTCACTTTTTGTCTGAAAAGTGTTTTTGTTCATTATTAGTCACTTTGGTTATTTTTTAGGTTGTTTTGTGGGTAAGATGGTTTATAAGTCAAAGACATCTGTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU602 False 483 lncRNA 0.41 3 1609532 1675981
TU613 True 604 lncRNA 0.43 2 1637662 1654380
XR_005640491.1 False 547 lncRNA 0.38 3 1654341 1675953

Neighbor

gene id symbol gene type direction distance location
tomm20b tomm20,LOC103375291,LOC103383373,LOC100703030,LOC108247505 coding downstream 150665 1451999 ~ 1458867 (-)
LOC120566769 NA coding downstream 1031540 572764 ~ 577992 (-)
tbce NA coding downstream 1179548 404857 ~ 429984 (-)
LOC120560351 NA coding downstream 1279499 319682 ~ 330033 (-)
LOC120560232 LOC103372506 coding downstream 1302902 277480 ~ 306630 (-)
LOC120566021 NA coding upstream 421388 2097369 ~ 2106501 (-)
LOC120566031 NA coding upstream 452592 2128573 ~ 2135521 (-)
sde2 NA coding upstream 576071 2252052 ~ 2266353 (-)
LOC120566094 LOC103375177,LOC102205209,LOC101467885,LOC100705917 coding upstream 595479 2271460 ~ 2302586 (-)
LOC120566106 LOC105920176,LOC103375176,LOC108251144 coding upstream 627583 2303564 ~ 2345270 (-)
G593 NA non-coding downstream 10424 1581983 ~ 1599108 (-)
G583 NA non-coding downstream 33756 1548032 ~ 1575776 (-)
G581 NA non-coding downstream 46558 1488448 ~ 1562974 (-)
G435 NA non-coding upstream 13540 1689521 ~ 1696030 (-)
G466 NA non-coding upstream 93195 1769176 ~ 1792739 (-)
G441 NA non-coding upstream 101462 1777443 ~ 1789759 (-)
G608 NA non-coding upstream 109809 1785790 ~ 1803387 (-)
G438 NA non-coding upstream 133186 1809167 ~ 1849971 (-)
stab2 NA other downstream 33037 1470417 ~ 1576495 (-)
G565 LOC105912973,LOC105893694,LOC105900140,LOC105893089 other downstream 249059 1359664 ~ 1360473 (-)
G519 NA other downstream 634705 966236 ~ 974827 (-)
G516 myhz1.2,LOC106938366,LOC104959125 other downstream 723189 885349 ~ 886343 (-)
G413 NA other downstream 1170084 438657 ~ 439448 (-)
LOC120566421 NA other upstream 57565 1733546 ~ 1749692 (-)
G670 LOC103370005,LOC106529077 other upstream 373088 2049069 ~ 2050384 (-)
G974 NA other upstream 1182515 2858496 ~ 2859302 (-)
G1003 tmem178a other upstream 1287759 2963740 ~ 2964320 (-)
G1008 tmem178a,LOC102307988 other upstream 1299257 2975238 ~ 2978115 (-)

Expression


Co-expression Network