LOC120555938 (LOC103372451,LOC105939179,LOC103462061,LOC108245380)


Basic Information

Item Value
gene id LOC120555938
gene name LOC103372451,LOC105939179,LOC103462061,LOC108245380
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 14712144 ~ 14719102 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU6167
tgtacttgtgtgtgtgtgtatcttttgtttaatctattattatataactCACtctgccataaaaaaaaaaaacatcattctgGCATCATCATGTATAATGTAGCCAGAACAGAAGTCTTTCCATTGATAGTTAGACCGATATGAAGAATAATCATATTGACCACCGGGGGGCGCCGAATCTCTTTGCTGAGCAGAAGCTGACTTTTACAACAACAATTGGTGCTTATCAATTTGTTCTTCACACGGTTGGTCAGACACCTCTGACAGGCAGAGGGTTTATTAAGTTTCAGATAATGCCATGGCAATATTTTTCCATCATGGTCTAAAATAAAGAAGTTGAACATGACTCCCACAGGACAGACCGGGGCAAGCGAGCGTTTACTGGCTAGATAATCTCACTGTTGTTGTAATCTGTCCATgtggctctctctctgtctctctaatcCTCTTACAGTTGCTGTCACCTTAAATCGCCACTCAGCCTGCAGAGCTGCTGGTCTGCTGGGGTCTCGGGGTGACATCCGAGCGGAGAGGCAGGGGAGCCATGGGGAGTCCCGGGCAGAAAGTGGTGCTGATCACCGGCTGCTCCTCCGGTATCGGGCTGAGGATGGCCGTGATGCTGGCCAAGGATGAACAGAAGCGCTATCACGTCATAGCAACGATGCGTGATCTGAAACGTAAAGATAAGCTGGTGGAAGCTGCTGGCGATGCATACGGGAAAACTCTTTCTCTGGCCGTACTGGACGTCTGCAACGATGAGTCCGTCAAACAGTGTTTTGATGGCATCAAAGATCGACATGTGGATGTCCTCATCAATAACGCAGGTATCGGCCTAGTGGGTCCAATAGAGAGCATCCCAATCGAAGAGATGAAGAAAGTGTTTGAGACCAATTTCTTTGGGGTGATCCGCATGATCAAGGAGGTGATGCCTGACATGaagaagaggaaaggaggaCACATCATCGTGGTCAGCAGTGTGATGGGACTGCAAGGTTAGCAGACGGTATGGTAGGGGAAGGGAGGAGAGGCGGAGTAGGGTGTCAAACGCTACAGGGAGAAATGACAGTTTGTCAGCTTCAGTTTGATGTATGTATGGGTTGATGATGGATGAATGGAAGAGAGGGTGGAAAGCTGAAGGAAGACTAATGGAGTTTAAGTACTGCTGTATGTCAGTACGAAACAGTGAACAAGAAGAACTGATCTATTAAACTGCATGTTGTCTCAAAGTGAAATGTAAGTACTTACTGTGTTTCTATAGGTGTGGTGTTTAATGACGTGTATGCAGCTTCCAAGTTTGCTATGGAGGGCTTCTGTGAGAGTTTGGCTGTGCAGCTCTTGAAGTTTAATGTCACGTGAGTGCCCCTGATGTGATGATTtgagtgtgcatgagcagtgattgacatgcagttagacaccgccccccctccccccccggccctgattggtgcatcggaacagggagctgtggatttttgcaaatcgcactacaggctgtaggtggtgccagaggagccggattgttttttaaattaatgcttcttgtagttctactggaacatagggtcagtttaaGCAAATATGACAGTAAGTTAGTTTTATAGgctaagtcttacctactgcacctttaaccaaCAACTCCAGTTTTTTGAGCAAGTGAAAACAAAATTAGGCTTAGTCTGATTATCATCCTACCACTGGTTCTGACAATGTGATGCAGAATATACAACTAAAACctcaaaaatatggtgttatcCTACTTTCTTTACTTTAGTCGGGCAGTCCAACGCTGTTATAAATCCTGAATACTTTGTGAGAGAGACAAAAAAGtcaatttgttttcatttacgAAGACTGCGCCCAAATGTTGAAGGGATTAATAAATTATTGAAATTGTTATTGATTAATATTCATTTGCGATATTAATCAATAAATGATTCCAGCACTAGTGTTACCCATTTGCCATTGAGTTCTTCCTCAATCTAACAATGCTCTTATGCTTCTTATGATCCCCCTCTGTTGTGGGTCTCTCTCATTAGATTGTCGATGATCGAGCCAGGCCCAGTGCGCACAGATTTTGAGACTAAGATGATTGAGGAAGTGAAGCAGAAGGAGTTTCCTGGAGCTGATCCTGATACGGTGCATTACTTCAAGAATGTCTATCTTCCTTCTTCTATTGACATCTTTGAGACGCTGGGACAAACGCCTGACGACATCGCCAGGTGTACCAAGAAAGTGATTGAAGCAAGCAGGCCGCGCTTCCGTAATCTGACCAACCCCTTGTACACTCCCATCGTAGCGATGAAATACGCTGATGAAACTGGAGGCCTGTCTGTCCATGCCTTCTACCACATGCTCTTTAACCTGGGACCTCTAATGCACGTCAGCATGACTGTCATGAAGTACCTCACCTGTGGATGTCTGAGGAGCAGGACAGTTGCACCAAACTAGAAACTTATATATTATACACACATGTGAAACACCTTGAGGATGTAGACCACAAACTACCTCGGCTTAAAAACAGCTTCAAAGAGATAATCTTCTGTGAGCTGccatatttccctctgtttataCAGTTATCTGTTTTGTAATGAACAATTACTCAAAAAACAACTCATTTCTATATTCTCTTTTCTGTATGAGATTGTAGCTTATGGATGTGTAGATACCACACCTGAGTCCAGTTGAGTTAAAATACAACCGTTTTAGAAATAGTTGTAGCCTACCCAGAGTGCCAAATGTGTAGGGTTTGCCCTTATGAGACAACATACTGATTTCATTGTTTTATCCCAACCGATCCCAAACAACTTCACATTTCAGTCTTATACTCTAATTGGTTCTGAAAGAGGAGTCTACAccttgtttatttgtg
>XM_039795148.1
TACAGTTGCTGTCACCTTAAATCGCCACTCAGCCTGCAGAGCTGCTGGTCTGCTGGGGTCTCGGGGTGACATCCGAGCGGAGAGGCAGGGGAGCCATGGGGAGTCCCGGGCAGAAAGTGGTGCTGATCACCGGCTGCTCCTCCGGTATCGGGCTGAGGATGGCCGTGATGCTGGCCAAGGATGAACAGAAGCGCTATCACGTCATAGCAACGATGCGTGATCTGAAACGTAAAGATAAGCTGGTGGAAGCTGCTGGCGATGCATACGGGAAAACTCTTTCTCTGGCCGTACTGGACGTCTGCAACGATGAGTCCGTCAAACAGTGTTTTGATGGCATCAAAGATCGACATGTGGATGTCCTCATCAATAACGCAGGTATCGGCCTAGTGGGTCCAATAGAGAGCATCCCAATCGAAGAGATGAAGAAAGTGTTTGAGACCAATTTCTTTGGGGTGATCCGCATGATCAAGGAGGTGATGCCTGACATGaagaagaggaaaggaggaCACATCATCGTGGTCAGCAGTGTGATGGGACTGCAAGGTGTGGTGTTTAATGACGTGTATGCAGCTTCCAAGTTTGCTATGGAGGGCTTCTGTGAGAGTTTGGCTGTGCAGCTCTTGAAGTTTAATGTCACATTGTCGATGATCGAGCCAGGCCCAGTGCGCACAGATTTTGAGACTAAGATGATTGAGGAAGTGAAGCAGAAGGAGTTTCCTGGAGCTGATCCTGATACGGTGCATTACTTCAAGAATGTCTATCTTCCTTCTTCTATTGACATCTTTGAGACGCTGGGACAAACGCCTGACGACATCGCCAGGTGTACCAAGAAAGTGATTGAAGCAAGCAGGCCGCGCTTCCGTAATCTGACCAACCCCTTGTACACTCCCATCGTAGCGATGAAATACGCTGATGAAACTGGAGGCCTGTCTGTCCATGCCTTCTACCACATGCTCTTTAACCTGGGACCTCTAATGCACGTCAGCATGACTGTCATGAAGTACCTCACCTGTGGATGTCTGAGGAGCAGGACAGTTGCACCAAACTAGAAACTTATATATTATACACACATGTGAAACACCTTGAGGATGTAGACCACAAACTACCTCGGCTTAAAAACAGCTTCAAAGAGATAATCTTCTGTGAGCTGccatatttccctctgtttataCAGTTATCTGTTTTGTAATGAACAATTACTCAAAAAACAACTCATTTCTATATTCTCTTTTCTGTATGAGATTGTAGCTTATGGATGTGTAGATACCACACCTGAGTCCAGTTGAGTTAAAATACAACCGTTTTAGAAATAGTTGTAGCCTACCCAGAGTGCCAAATGTGTAGGGTTTGCCCTTATGAGACAACATACTGATTTCATTGTTTTATCCCAACCGATCCCAAACAACTTCACATTTCAGTCTTATACTCTAATTGGTTCTGAAAGAGGAGTCTACAccttgtttatttgtgtgttgtatatgtacTTACTTTTTGAATTCTGTCAATGTATTAAAGCAACTATTTTGGaa

Function

NR:

description
PREDICTED: retinol dehydrogenase 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6167 True 2869 TUCP 0.50 4 14712203 14719102
XM_039795148.1 False 1529 mRNA 0.46 6 14712144 14718653

Neighbor

gene id symbol gene type direction distance location
palb2 NA coding downstream 1176 14698682 ~ 14710968 (-)
iqce NA coding downstream 48069 14647019 ~ 14664075 (-)
LOC120567658 LOC103373371,LOC101468855,LOC102204912,LOC104921159,LOC102786911 coding downstream 66292 14616189 ~ 14645852 (-)
LOC120567649 LOC103373062,LOC102206023,LOC101469992,LOC102313636,LOC102077197,LOC102776633 coding downstream 121528 14557895 ~ 14590616 (-)
mad1l1 mad1l1 coding downstream 196308 14442379 ~ 14515836 (-)
LOC120567499 NA coding upstream 86648 14805750 ~ 14807316 (-)
LOC120562191 NA coding upstream 92240 14811342 ~ 14824896 (-)
sh2d3a sh2d3a,LOC104966618 coding upstream 137264 14856366 ~ 14876182 (-)
smcr8b NA coding upstream 321745 15040847 ~ 15052712 (-)
mief2 mief2,LOC102193621,LOC100697825 coding upstream 335349 15054451 ~ 15063940 (-)
G4450 NA non-coding downstream 272481 14439456 ~ 14439663 (-)
G4443 NA non-coding downstream 414692 14297089 ~ 14297452 (-)
LOC120558606 NA non-coding downstream 603451 14105951 ~ 14108693 (-)
LOC120558586 NA non-coding downstream 633145 14078317 ~ 14078999 (-)
LOC120558581 NA non-coding downstream 640597 14067848 ~ 14071547 (-)
G4566 NA non-coding upstream 131859 14850961 ~ 14852833 (-)
G4658 NA non-coding upstream 250379 14969481 ~ 14970706 (-)
G4659 actbb,LOC102799139,LOC103383494,LOC102218394,LOC101168921,LOC108244554,LOC106519625 non-coding upstream 252278 14971380 ~ 14973191 (-)
G4663 NA non-coding upstream 280039 14999141 ~ 14999689 (-)
G4670 NA non-coding upstream 293823 15012925 ~ 15013189 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 669634 14018902 ~ 14042510 (-)
G4168 NA other downstream 1144878 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 1671864 13037270 ~ 13040280 (-)
LOC120560419 LOC103368013,LOC106919771,LOC106522471 other downstream 1683751 12990564 ~ 13028393 (-)
trnac-gca_3 NA other downstream 1846105 12865968 ~ 12866039 (-)
ubl5 ubl5 other upstream 182044 14901146 ~ 14904229 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 707442 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 1626616 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 2692951 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 2991537 17710639 ~ 17713898 (-)

Expression


Co-expression Network