G4729 (arpc1b,LOC100695691,LOC102293678,LOC101469153)


Basic Information

Item Value
gene id G4729
gene name arpc1b,LOC100695691,LOC102293678,LOC101469153
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 15328188 ~ 15329291 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU6420
AACCAAACATTGTTGAGCACTGTAACAGCAATCATTTATTAAATGCATATTATGACCAGCATAAGCTTTCATAGTGATTCATATAAAATGCCTGCTTTAAGCATTTAGCTCAGACTGAGCTCTCTCTGATATAACTAATCTAACTCATTAAGTATCGTTTGCAGACCTGTGGTCAGTCCCTCTGTATACAGTGTTGAGTTTAACAAGCTCAGCAGTGAGCTTCAGAGGGATTGCAAACACTGTTAGACCCGAGTCTGATCGTTTAActtgcatataaaaaaaaactgattaaaaTAAGGCCAAGAAGCTTTGTGTAAGGCAGCAGATTTTCTTCATATCTCCAGAAGCTAATATACTTTAGGTGGAGTGATGTAAACTTCAGTTCATACTATCTTTAAGTTCTTCATTGCAGACTCCAGagtctgaCATCCCAGATGCTCATCCCACCATCCATGCCAGTGGTGCAAAACTTGGTGCACTGGTTTCGTCCTCCTTCCAGCACTGAGATTTGATTGATGCTGTTCTTGTGCAGGGTGTTCAGGTCATTGTCAGTGCTCTGGGTCTCTGAGGCCCGACGGTCCAGGTTCTGGAAACGTTCCCTGGCACTGATGCCCTTCTGGGCCGTCTGCTTAGGAACGTCCAGCTTGCCACCAAATGTCAAGCTGGCTTTGGCACTGTCATACACAAACAGCACAGGGTAACAGTCGTGGCCCTGGAGCAACAGAAACACATGAGGATGCAATGCAGGTGAAGCTGGAAGATAACATCAGGATATAACATCAGTATGGTAATAAAATACC

Function

symbol description
arpc1b Predicted to enable actin filament binding activity. Acts upstream of or within T cell differentiation and thrombocyte differentiation. Predicted to be located in actin cytoskeleton; cytoplasm; and nucleus. Predicted to be part of Arp2/3 protein complex. Is expressed in blood; blood island; pectoral fin musculature; pharyngeal arch 3-7 skeleton; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in gastritis; immunodeficiency 71; and myelodysplastic syndrome. Orthologous to human ARPC1B (actin related protein 2/3 complex subunit 1B).

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 1B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6420 True 800 lncRNA 0.55 3 15328188 15329291

Neighbor

gene id symbol gene type direction distance location
LOC120557175 NA coding downstream 14283 15312432 ~ 15313905 (-)
LOC120561684 NA coding downstream 16229 15310698 ~ 15311959 (-)
zgc:77849 LOC104921184,LOC104966096,LOC102796782,LOC100695168,LOC101467750,LOC103369343 coding downstream 29350 15293871 ~ 15298838 (-)
myo15ab myo15a,LOC102296698,LOC101486664 coding downstream 196311 15072782 ~ 15131877 (-)
alkbh5 alkbh5 coding downstream 257450 15065648 ~ 15070738 (-)
foxk1 foxk1 coding upstream 47909 15377200 ~ 15393673 (-)
LOC120564677 LOC104962345,LOC107388844,LOC108244157 coding upstream 66544 15395835 ~ 15401445 (-)
gpank1 gpank1 coding upstream 81207 15410498 ~ 15414963 (-)
LOC120564766 NA coding upstream 89961 15419252 ~ 15424386 (-)
LOC120561525 xylt1,LOC102778305 coding upstream 487047 15816338 ~ 15899401 (-)
G4722 arpc1a,LOC102781765 non-coding downstream 6805 15278258 ~ 15321383 (-)
G4713 NA non-coding downstream 64756 15199745 ~ 15263432 (-)
G4710 NA non-coding downstream 174042 15153544 ~ 15154146 (-)
G4668 NA non-coding downstream 274121 15053466 ~ 15054067 (-)
G4669 NA non-coding downstream 299050 15028486 ~ 15029138 (-)
G4797 NA non-coding upstream 401364 15730655 ~ 15730956 (-)
G4798 NA non-coding upstream 406064 15735355 ~ 15735682 (-)
G4799 NA non-coding upstream 406498 15735789 ~ 15736178 (-)
G4815 NA non-coding upstream 452106 15781397 ~ 15781753 (-)
G4860 NA non-coding upstream 664313 15993604 ~ 15994085 (-)
ubl5 ubl5 other downstream 423959 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 609086 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 1285678 14018902 ~ 14042510 (-)
G4168 NA other downstream 1760922 13531753 ~ 13567266 (-)
LOC120560438 dnal4,LOC108261343,LOC106591471,LOC108436609,LOC108412416 other downstream 2287908 13037270 ~ 13040280 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other upstream 97253 15426544 ~ 15685639 (-)
LOC120558720 NA other upstream 1016427 16345718 ~ 16347922 (-)
LOC120569099 NA other upstream 2082762 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 2381348 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 2488216 17817507 ~ 17835761 (-)

Expression


Co-expression Network