rrp36 (rrp36)


Basic Information

Item Value
gene id rrp36
gene name rrp36
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 291233 ~ 320779 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU66
GCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCAACGCCTAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAGCGCCCAGAGACACAACGCCAACAACCAGAGACACAACGCCACCGCTCAGTAACACAACACCACCGCCCAGTAACACAACGCCACCGCCCAGAGACACAACGCCACCGCCCAGAGACACAACGCCACCGCTCAGTAACACAACGCCACCCCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCACCCCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCACCGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCAACGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCACCGCTCAGTAACACAACGCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCATCACCCAGAGACACAACGCCAACGCCAAACTcaggaccttcacccaggagaccgggtccAACGGTGGGACGTTTCCTAATCCCAACCGAAGCCTCACGATTGGTTGTtgtacacgcggatagctcaagaagcgtccagataacacgccacgtggctttagtaCAGATCACTGGAAACAGCTGCTCGGCCTCAGAAACTCCATTCATGTTGAACtctctttgttgtgtttttttttttttataaaatggaCGTGTATATGTTGTTTGCATCTGAAGTTTTTCAAACACTTCGTACAGTCTTGAAAAGTTtggaaaatacttttatttaatgtttataaGGCTGGGAATGTTTATGAATTTCA
>TU69
GCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCAACGCCTAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAGCGCCCAGAGACACAACGCCAACAACCAGAGACACAACGCCAACAACCAGAGACACAACGCCAACAACCAGAGACACAACGCCAACAACCAGAGACACAACGCCACCGCTCAGTAACACAACACCACCGCCCAGTAACACAACGCCACCGCCCAGAGACACAACGCCACCGCCCAGAGACACAACGCCACCGCTCAGTAACACAACGCCACCCCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCACCCCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCACCGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCAACGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCACCGCTCAGTAACACAACGCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCATCACCCAGAGACACAACGCCAACGCCAAACTcaggaccttcacccaggagaccgggtccAACGGTGGGACGTTTCCTAATCCCAACCGAAGCCTCACGATTGGTTGTtgtacacgcggatagctcaagaagcgtccagataacacgccacgtggctttagtaCAGATCACTGGAAACAGCTGCTCGGCCTCAGAAACTCCATTCATGTTGAACtctctttgttgtgtttttttttttttataaaatggaCGTGTATATGTTGTTTGCATCTGAAGTTTTTCAAACACTTCGTACAGTCTTGAAAAGTTtggaaaatacttttatttaatgtttataaGGCTGGGAATGTTTATGAATTTCA
>TU72
GCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAGCGCCCAGAGACACAACGCCAACAACCAGAGACACAACGCCAACAACCAGAGACACAACGCCAACAACCAGAGACACAACGCCAACAACCAGAGACACAACGCCACCGCTCAGTAACACAACACCACCGCCCAGTAACACAACGCCACCGCCCAGAGACACAACGCCACCGCCCAGAGACACAACGCCACCGCTCAGTAACACAACGCCACCCCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCACCCCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCACCGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCAACGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCACCGCTCAGTAACACAACGCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCATCACCCAGAGACACAACGCCAACGCCAAACTcaggaccttcacccaggagaccgggtccAACGGTGGGACGTTTCCTAATCCCAACCGAAGCCTCACGATTGGTTGTtgtacacgcggatagctcaagaagcgtccagataacacgccacgtggctttagtaCAGATCACTGGAAACAGCTGCTCGGCCTCAGAAACTCCATTCATGTTGAACtctctttgttgtgtttttttttttttataaaatggaCGTGTATATGTTGTTTGCATCTGAAGTTTTTCAAACACTTCGTACAGTCTTGAAAAGTTtggaaaatacttttatttaatgtttataaGGCTGGGAATGTTTATGAATTTCA
>TU76
GCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCAACGCCTAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAGCGCCCAGAGACACAACGCCAACAACCAGAGACACAACGCCAACAACCAGAGACACAACGCCACCGCTCAGTAACACAACACCACCGCCCAGTAACACAACGCCACCGCCCAGAGACACAACGCCACCGCCCAGAGACACAACGCCACCGCTCAGTAACACAACGCCACCCCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCACCCCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCACCGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCAACGCTCAGTAACACAACGCCAACGCCCAGAGACACAACGCCAACACCCAGAGACACAACGCCACCGCTCAGTAACACAACGCTCAGTAACACAACGCCACCGCTCAGTAACACAACGCCATCACCCAGAGACACAACGCCAACGCCAAACTcaggaccttcacccaggagaccgggtccAACGGTGGGACGTTTCCTAATCCCAACCGAAGCCTCACGATTGGTTGTtgtacacgcggatagctcaagaagcgtccagataacacgccacgtggctttagtaCAGATCACTGGAAACAGCTGCTCGGCCTCAGAAACTCCATTCATGTTGAACtctctttgttgtgtttttttttttttataaaatggaCGTGTATATGTTGTTTGCATCTGAAGTTTTTCAAACACTTCGTACAGTCTTGAAAAGTTtggaaaatacttttatttaatgtttataaGGCTGGGAATGTTTATGAATTTCA
>TU90
acacacacacacacacacacacacacacacacacacacacatacacacatacacacacacacacacacacacacagagacacacacacacacagagacacacacacacacacacacacacacagagacacacaacacacacacacacacagagacacatacacacacacacacacacacacacagagacacttacacacacacacacacacacacacacacacacacacagagacacacacacagagacacacatacacacacacagagacacacacacacacacacacacacacacacagagacacacacagagacacacacagagacacacacac
>TU91
acacacacacacacacacacacacacacacacacacacacatacacacatacacacacacacacacacacacacagagacacacacacacacagagacacacacacacacacacactcagagacacacacacacacacacacacacacacagagacacacacacacacacacacacacacacacacacacacagacacacacacacacacacac
>XM_039812578.1
aaacatttattttgaaaaccggaAGTGCACTGTGTACCTTACCAGTGATTCTCGCAGCAGCCGACACGCACACACGTGGATAATGGAGCTCAGAAAAGCAGGATTTTAACCAGAACTTTACATCCAGAtccacaagaacacacacacacacacacacacacacacatcctcctGAACTACAGGAACCGAGATGAAGGGGAAAGAGAAGCAGCAGCCGCGGCGGCCggagacgaagaagaagaacgtGGCGACGAGCAGCAGCGACGACGAAGACTCCGACGTGGAGAGGAACTTCGCTCTGCTCAccgagagaggaagaggagcgcaggagggagaggaagaggaagaactcAGCcgtgatgaggaggaggaggaggaagtagaagaaggagaagatggGTCAgatgagggagaggaggaggaggaggaggaggaggaggagggagaggaagaggaagaggaagaggaggacggaGAGAGTGAAACCTCTGAGGATGAGGAGGGTGATGGTGTTGATGAAGAGCCAGAGGAGGCTGGCGGCAGCGGGGAGATCCAGACGACAGACGACATTAAAACAGagcTCTCCAACATGTCCTTCGAGGAAATCATGAAGCTGCAGAACAAAGTGGGGACCAAAGTATACAACCAGGTCGCCTACGGCAACAACCAGAGAGGAGGGACCACCGGCAGGAAGAAACGCCTCAACAAGAAcagGCCCATGGAGATTTCAGCCAAGAGACCAGCTCCATTCCTTCGTCAGGTCGTCTCCGTCAAGAAACCGACGCTGAGAGATCCTCGGTTCGATGACCTGTCCGGAGAATACAAACCGGAGATCTTCGAGAGCACGTACAAGTTCATCAACGAGATCCGCGGCCGAGAGAAGGAGATCGTCCAGAAGCAGCTGAAGAGGACCAAGAAGGACAACAAGAAGAAGGAGAAACTGCAGTTCCTTCTGAAGAGGATgGAGAACCAGGAGCGAGCGAGGCAGAGCCGCGAGcagcagcgagagagagagctgcaCTTCAAGAGGCTGCAGAGAGAGCGAGCCAATCAGGGCGCACGGCCGTTCTTCCTCAAGAACTcggagaagaagaagctgcagcTGGCGGAGAAGTACCGGGAGCTGAAGAAGAGCGGCAAACTGGACAACTTCCTGagcaagaagaggaagaggaacgCCGGGAAGGACCGCAGGAAGCTGCCCCGACAGCCGCACGCCGCCACCGCTCAGTAACACTCCGCCACCGCTCAGTAACACAACGCCAACGCCTAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAGCG
>XM_039812587.1
aaacacacacacacaaacacacacacacacacacacacacacacatcctcctGAACTACAGGAACCGAGATGAAGGGGAAAGAGAAGCAGCAGCCGCGGCGGCCggagacgaagaagaagaacgtGGCGACGAGCAGCAGCGACGACGAAGACTCCGACGTGGAGAGGAACTTCGCTCTGCTCAccgagagaggaagaggagcgcaggagggagaggaagaggaagaactcAGCcgtgatgaggaggaggaggaggaagtagaagaaggagaagatggGTCAgatgagggagaggaggaggaggaggaggaggaggaggagggagaggaagaggaagaggaagaggaggacggaGAGAGTGAAACCTCTGAGGATGAGGAGGGTGATGGTGTTGATGAAGAGCCAGAGGAGGCTGGCGGCAGCGGGGAGATCCAGACGACAGACGACATTAAAACAGagcTCTCCAACATGTCCTTCGAGGAAATCATGAAGCTGCAGAACAAAGTGGGGACCAAAGTATACAACCAGGTCGCCTACGGCAACAACCAGAGAGGAGGGACCACCGGCAGGAAGAAACGCCTCAACAAGAAcagGCCCATGGAGATTTCAGCCAAGAGACCAGCTCCATTCCTTCGTCAGGTCGTCTCCGTCAAGAAACCGACGCTGAGAGATCCTCGGTTCGATGACCTGTCCGGAGAATACAAACCGGAGATCTTCGAGAGCACGTACAAGTTCATCAACGAGATCCGCGGCCGAGAGAAGGAGATCGTCCAGAAGCAGCTGAAGAGGACCAAGAAGGACAACAAGAAGAAGGAGAAACTGCAGTTCCTTCTGAAGAGGATgGAGAACCAGGAGCGAGCGAGGCAGAGCCGCGAGcagcagcgagagagagagctgcaCTTCAAGAGGCTGCAGAGAGAGCGAGCCAATCAGGGCGCACGGCCGTTCTTCCTCAAGAACTcggagaagaagaagctgcagcTGGCGGAGAAGTACCGGGAGCTGAAGAAGAGCGGCAAACTGGACAACTTCCTGagcaagaagaggaagaggaacgCCGGGAAGGACCGCAGGAAGCTGCCCCGACAGCCGCACGCCGCCACCGCTCAGTAACACTCCGCCACCGCTCAGTAACACAACGCCAACGCCTAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAGCGC
>XM_039812597.1
acacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacatcctcctGAACTACAGGAACCGAGATGAAGGGGAAAGAGAAGCAGCAGCCGCGGCGGCCggagacgaagaagaagaacgtGGCGACGAGCAGCAGCGACGACGAAGACTCCGACGTGGAGAGGAACTTCGCTCTGCTCAccgagagaggaagaggagcgcaggagggagaggaagaggaagaactcAGCcgtgatgaggaggaggaggaggaagtagaagaaggagaagatggGTCAgatgagggagaggaggaggaggaggaggaggaggaggagggagaggaagaggaagaggaagaggaggacggaGAGAGTGAAACCTCTGAGGATGAGGAGGGTGATGGTGTTGATGAAGAGCCAGAGGAGGCTGGCGGCAGCGGGGAGATCCAGACGACAGACGACATTAAAACAGagcTCTCCAACATGTCCTTCGAGGAAATCATGAAGCTGCAGAACAAAGTGGGGACCAAAGTATACAACCAGGTCGCCTACGGCAACAACCAGAGAGGAGGGACCACCGGCAGGAAGAAACGCCTCAACAAGAAcagGCCCATGGAGATTTCAGCCAAGAGACCAGCTCCATTCCTTCGTCAGGTCGTCTCCGTCAAGAAACCGACGCTGAGAGATCCTCGGTTCGATGACCTGTCCGGAGAATACAAACCGGAGATCTTCGAGAGCACGTACAAGTTCATCAACGAGATCCGCGGCCGAGAGAAGGAGATCGTCCAGAAGCAGCTGAAGAGGACCAAGAAGGACAACAAGAAGAAGGAGAAACTGCAGTTCCTTCTGAAGAGGATgGAGAACCAGGAGCGAGCGAGGCAGAGCCGCGAGcagcagcgagagagagagctgcaCTTCAAGAGGCTGCAGAGAGAGCGAGCCAATCAGGGCGCACGGCCGTTCTTCCTCAAGAACTcggagaagaagaagctgcagcTGGCGGAGAAGTACCGGGAGCTGAAGAAGAGCGGCAAACTGGACAACTTCCTGagcaagaagaggaagaggaacgCCGGGAAGGACCGCAGGAAGCTGCCCCGACAGCCGCACGCCGCCACCGCTCAGTAACACTCCGCCACCGCTCAGTAACACAACGCCAACGCCTAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAGCGC
>XM_039812604.1
cacacacacacacacacacacacacacacacacacacacacacacacatcctcctGAACTACAGGAACCGAGATGAAGGGGAAAGAGAAGCAGCAGCCGCGGCGGCCggagacgaagaagaagaacgtGGCGACGAGCAGCAGCGACGACGAAGACTCCGACGTGGAGAGGAACTTCGCTCTGCTCAccgagagaggaagaggagcgcaggagggagaggaagaggaagaactcAGCcgtgatgaggaggaggaggaggaagtagaagaaggagaagatggGTCAgatgagggagaggaggaggaggaggaggaggaggaggagggagaggaagaggaagaggaagaggaggacggaGAGAGTGAAACCTCTGAGGATGAGGAGGGTGATGGTGTTGATGAAGAGCCAGAGGAGGCTGGCGGCAGCGGGGAGATCCAGACGACAGACGACATTAAAACAGagcTCTCCAACATGTCCTTCGAGGAAATCATGAAGCTGCAGAACAAAGTGGGGACCAAAGTATACAACCAGGTCGCCTACGGCAACAACCAGAGAGGAGGGACCACCGGCAGGAAGAAACGCCTCAACAAGAAcagGCCCATGGAGATTTCAGCCAAGAGACCAGCTCCATTCCTTCGTCAGGTCGTCTCCGTCAAGAAACCGACGCTGAGAGATCCTCGGTTCGATGACCTGTCCGGAGAATACAAACCGGAGATCTTCGAGAGCACGTACAAGTTCATCAACGAGATCCGCGGCCGAGAGAAGGAGATCGTCCAGAAGCAGCTGAAGAGGACCAAGAAGGACAACAAGAAGAAGGAGAAACTGCAGTTCCTTCTGAAGAGGATgGAGAACCAGGAGCGAGCGAGGCAGAGCCGCGAGcagcagcgagagagagagctgcaCTTCAAGAGGCTGCAGAGAGAGCGAGCCAATCAGGGCGCACGGCCGTTCTTCCTCAAGAACTcggagaagaagaagctgcagcTGGCGGAGAAGTACCGGGAGCTGAAGAAGAGCGGCAAACTGGACAACTTCCTGagcaagaagaggaagaggaacgCCGGGAAGGACCGCAGGAAGCTGCCCCGACAGCCGCACGCCGCCACCGCTCAGTAACACTCCGCCACCGCTCAGTAACACAACGCCAACGCCTAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAACGCCCAGAGACACAGCGC

Function

symbol description
rrp36 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within cleavage involved in rRNA processing. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; axis; digestive system; immature eye; and midbrain. Orthologous to human RRP36 (ribosomal RNA processing 36).

NR:

description
ribosomal RNA processing protein 36 homolog

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component

KEGG:

id description
K14795 RRP36; ribosomal RNA-processing protein 36

RNA

RNA id representative length rna type GC content exon number start site end site
TU66 False 998 lncRNA 0.41 2 319697 320779
TU69 False 1061 lncRNA 0.51 2 319697 320779
TU72 False 1031 lncRNA 0.39 3 319697 320779
TU76 False 1019 lncRNA 0.39 2 319697 320779
TU90 False 337 lncRNA 0.46 2 291233 291735
TU91 False 214 lncRNA 0.50 2 291233 296896
XM_039812578.1 True 1328 mRNA 0.56 9 309769 319823
XM_039812587.1 False 1208 mRNA 0.57 9 304227 319824
XM_039812597.1 False 1230 mRNA 0.57 9 296857 319824
XM_039812604.1 False 1211 mRNA 0.57 9 291252 319824

Neighbor

gene id symbol gene type direction distance location
rbm34 LOC103399136,LOC103383372 coding downstream 109413 430192 ~ 439191 (+)
LOC120560448 NA coding downstream 131197 451976 ~ 453564 (+)
LOC120566701 NA coding downstream 137599 458378 ~ 462863 (+)
LOC120566520 NA coding downstream 149966 470745 ~ 473664 (+)
LOC120566531 NA coding downstream 165833 486612 ~ 494282 (+)
G30 NA non-coding upstream 11767 215461 ~ 279466 (+)
G8 NA non-coding upstream 13765 266154 ~ 277468 (+)
G40 NA non-coding upstream 16104 273615 ~ 275129 (+)
G7 NA non-coding upstream 24510 149058 ~ 266723 (+)
G31 NA non-coding upstream 74871 215995 ~ 216362 (+)
G48 NA non-coding downstream 24849 345628 ~ 345907 (+)
G49 NA non-coding downstream 48249 369028 ~ 369297 (+)
G50 LOC104942424 non-coding downstream 49872 370651 ~ 386648 (+)
G55 NA non-coding downstream 88962 409741 ~ 410462 (+)
G221 NA non-coding downstream 201753 522532 ~ 522989 (+)
fbxo3 NA other upstream 53494 70004 ~ 237739 (+)
LOC120560073 LOC103372506,LOC102203670,LOC101482513,LOC102296948 other upstream 66637 200413 ~ 224596 (+)
LOC120560058 NA other upstream 108930 158391 ~ 182303 (+)
G11 NA other upstream 217564 23490 ~ 73669 (+)
LOC120559874 LOC103372511,LOC100698978,LOC102208596,LOC101483657 other upstream 224733 854 ~ 66500 (+)
G184 NA other downstream 157192 477971 ~ 481890 (+)
G176 LOC104946033 other downstream 262611 583390 ~ 598207 (+)
LOC120566394 NA other downstream 387374 708153 ~ 753762 (+)
LOC120566368 NA other downstream 587061 907840 ~ 1012869 (+)
LOC120566414 LOC104946033 other downstream 605527 926306 ~ 1011615 (+)

Expression


Co-expression Network