LOC120558720


Basic Information

Item Value
gene id LOC120558720
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16345718 ~ 16347922 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU6856
ATAAAATGAGAAATCAATGAATGGTTATAGTGATAGACACTTTTCAACACTTAGACTAGAAAGGCGCCTTCACTCTACTCTCTCCTCTACACACTATTCTAGCGTCTAACTAATGAGGTTGACATCAATCCAAAACAGTGGCTCATGAATGCTTCTACCTGTCACCCAGAGCTCAGAAACATCTGGAACAGTGTCGGTGGTGGTGTCAGTGGTTGTGATGGTGACGTGGCCAGATGGTAGAGTGGTGGGAAGATTAAGGTGGAGGATGGACAAGATGGATGTGGTATGGGATGAGGACAATGCGTTCTTCCTGTCCTCCACACAGGATCCTCCTCCTGCCTCTGACCCTTCGAGCCGCTCTGAGCTGTCTGCCCACCGATCCTCCTCGAACGGGGCCGAGGGGTACACCAAGCTGCTCAGGGCTGCATTGTTGGACCAAGGAGTGGAAGAAGTGGGAAGCGGATGAGGGAGGGGGATAGAAAGGTGAACTGGTCATGGAGATTAGGAGGTATTTTTTATTCTATGGCgcagaaaacacagagacagggaTGGCTTGCTTTCCCTGAATTTTGCTATTCTACTTTTGATCCTTACAGAACAGCTGGCTCCTGGTAGGGCAGAGCTCATGCAGCACCAGTGTCCCTTCTGCAATGCAGCATTTCTTTGACCTCTGATAAAATACCCCAGATTTTCTTCAAACATAGCTAGCACTCTGCTAAAAAATCACTGCTGCACATGCTCAAAAATGTAATACCATATCTTATTTAGTTAAGATAGTGGTGGAATGAGGTTGGCATGAATGGACACATTACTAACATATGACTGATGATTTACATCTGCTAGGAAGCATCCACACTTTACTCAACTAAGGTTACTTTGGTGTTATGGCTTGTAGAAGAGAAACAATAAAGCAAAGATCTACACTTAGTATAATCAAGTTAGCAGTGAAATAAAAGGCTACAGTCAAGAGGAGGGTAGACACCAGACCACAGTCTTTCTTACACATGGAACGACGGAAGAGGGACTTGACTTTGTCTCTGTCCTTCAGCCTGTTCCTCATACGGGGAAACATTTTGGTCGCTGTTTAACAGCAAAGTGCAGCCACATGGGAGGTAGACAAAGGAATGGATGCAAGCAGAGATAGGGATGTAAGAGAGGAGACAGGTAGGTAGGGAAGGAAATGAAAAGACAAAGGGAAAGAAGGTAGGCAGGGGTGAAGAAATACATTAAGAAACAAGAAAGACATGGGGAAGACATATTGAGGACTGTTGAGGAAAGTTTACACATGTCATGCATCAGCACAAATGACCCTTtggacatgacacacacacacacacacacacacagacacagacacacacacagacacacacgcacacacatattgcAACACCtgcattatttatgtatttatcacACAGTTTTACTTTAAAATCCATTTATTTGAGTTTTTGCGTTTCCTTGGAAAATTCTGAGGTGGAGGGGGAAGTTTTAATGCCTGTTCTACAAGTGCAGCTTCATGTGTAGATGAAACGGCTGTGGCTTTCGGTTCACCCGTGTCTCTCTGACCTCTGGCTGTGGGCTGGTCTTTACATGAAAACACTCCTGAATGATCTTTGTGCCCTGCCTCTGATGATGATCTTACTTCCTGGTCTATGGCTGAAGCAGGGAAAGGGGGACTTTGGTACTTTGATGAGACCGGTTCCGCCAGGTCAATGAGGGAGGATCTGAATTCAAGAAGGTCATACTCACTGCTGTTACGCTGGGGTGAGATGGCATCACCTGCTAAGGCTGAGCCTCCAGAGCCATCTGAGCTGACGAAGGAGCTGTTGTCCTGACAGTTTCAGGGTGATCCAGTTTCCACGTCTGTGAAAGGGCAGACAtacaagaggaaagagaaaccTTAACAGAATGAGACACAAATAACCCGTACAGGGAGGCCAGGCTGGTCGGCAGGCCAAAGTATTGGGCAGTCAATCACCAATATTGCAGAAGTGAGCTAGACCAGCAATAAATGTTAATGTATGTTGGATATTCAGAATAAACAATGGACACTTAAAG
>XR_005639169.1
CTGAATTCAAGAAGGTCATACTCACTGCTGTTACGCTGGGGTGAGATGGCATCACCTGCTAAGGCTGAGCCTCCAGAGCCATCTGAGCTGACGAAGGAGCTGTTGTCCTGACAGTTTCAGGGTGATCCAGTTTCCACGTCTGTGAAAGGGCAGACAtacaagaggaaagagaaaccTTAACAGAATGAGACACAAATAACCCGTACAGGGAGGCCAGGCTGGTCGGCAGGCCAAAGTATTGGGCAGTCAATCACCAATATTGCAGAAGTGAGCTAGACCAGCAATAAATGTTAATGTATGTTGGATATTCAGAATAAACAATGGACACTTAAAGCTGCTGGTatcaatattattttattaaaggaGACCTACtatgcttttctgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6856 True 2061 TUCP 0.46 2 16345770 16347922
XR_005639169.1 False 386 lncRNA 0.45 2 16345718 16346195

Neighbor

gene id symbol gene type direction distance location
LOC120567135 LOC102194342,LOC101467413,LOC103358059,LOC102294944,LOC100712572 coding downstream 62032 16246404 ~ 16283686 (-)
sec23b LOC100697981,LOC102779165,LOC101466658 coding downstream 267375 16064549 ~ 16078343 (-)
LOC120561637 gsg1l,LOC104954731,LOC103358062 coding downstream 287365 16050764 ~ 16058353 (-)
nomo LOC446065,LOC107089097,LOC105931477,LOC102292868,LOC102196167 coding downstream 311103 15994372 ~ 16034615 (-)
LOC120561525 xylt1,LOC102778305 coding downstream 446317 15816338 ~ 15899401 (-)
wfikkn1 wfikkn1 coding upstream 4719 16352641 ~ 16356941 (-)
LOC120558696 rab40c,LOC103358055,LOC100700672,LOC101469960,LOC107089104 coding upstream 9141 16357063 ~ 16362428 (-)
LOC120558661 NA coding upstream 17343 16365265 ~ 16381421 (-)
pdcd11 NA coding upstream 35864 16383786 ~ 16402403 (-)
taf5 taf5 coding upstream 55988 16403910 ~ 16410013 (-)
G5069 NA non-coding downstream 19872 16325521 ~ 16325846 (-)
G5068 NA non-coding downstream 20395 16325015 ~ 16325323 (-)
LOC120558721 NA non-coding downstream 29831 16311929 ~ 16315887 (-)
G4915 NA non-coding downstream 88147 16195274 ~ 16257571 (-)
G4886 NA non-coding downstream 296089 16049388 ~ 16049629 (-)
G5081 NA non-coding upstream 344 16348266 ~ 16349983 (-)
G5079 mettl26 non-coding upstream 2145 16350067 ~ 16352468 (-)
G5125 LOC103362543,LOC101066958,LOC101475774,LOC104921624,LOC102209940,LOC103384338 non-coding upstream 301123 16649045 ~ 16651526 (-)
G5140 LOC103362533 non-coding upstream 414446 16762368 ~ 16843003 (-)
LOC120568012 NA non-coding upstream 569152 16917074 ~ 16920726 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 660079 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 1441489 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 1626616 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 2303208 14018902 ~ 14042510 (-)
G4168 NA other downstream 2778452 13531753 ~ 13567266 (-)
LOC120569099 NA other upstream 1064131 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 1362717 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 1469585 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 1487982 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 1531946 17879868 ~ 17881759 (-)

Expression


Co-expression Network