G5140 (LOC103362533)


Basic Information

Item Value
gene id G5140
gene name LOC103362533
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 16762368 ~ 16843003 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU6927
tcctttatttttattaaacaaaatttCAGTAAAAACTCTTAAGTAGAAAGACAAATTTCCCTGTCAGTAGTTTGCTCCAGCTGTAGGGCCGTCCCCAACTATATCATCACACATCTGTAAAACCACTGTACCCACGTTGTTCTGCAAATCAATCACGGTTACATACGATCTTTTCTTTAAATTCAGTTCGTAACAAAAAAGACATCTTTGTTAATATTCTGGTAATGCCGGATAATGTGTGAACCTTTCCCAGTCAATAACTTAGAAAAGATGAAAAACTATCCCTAAAAACAAACCACCATCTTGGTGGTTCCTGGCAGCCCTACACTGCTCTCTAAGAGGTCTCTCCCCATCTCTTTGTTTGTTCACTCCTACTGAATTAGCGCCGCGAGACAGAATGAGTCTGTGTTAACCGACTCATAACTGTTGGGTCACAGCGGGAGAAAGTTGACAGTATATTGTGTTAAAACTACAGCGTAGACAGCAGTGTCTGTTACAAAGGCGTTAAGTAAGAAACAGAGCGGTGAGCAGGTGCACCGTGCATGTTGAGCCAACTCTGGCAGTGTTTTCAACTAttactctttttttccctttttctttataaaaaaaaaaaaaaagaaaagaaagaaaaaaatttaaaagaaagGAGGAAGCTACACGATTATcatcacaaaataaaaatctctTTGGCATAGAATACCCACCCAAAAgcgtaaacacacacagacacactcacatgcgcacacacacactcttaaagAGGTTCTCTAACAGAAACCTACAAGCATCGTCATcattattatcagcaaaattATGCTATAAAACAAAGTTGAGCCCTGTTAAGATTATGAGTCCCGTACTCCGTGATAATTGCATATATTACATCAGGCTGAGAGCAGAGGGAGTAATCTCTACCGACGACTATATTCTCTTCTGCCCCATTACGTCCTATGTCAGCTCCTCCGATTCCCTTTCTCCCCCGGGTCTTTAATATTCACGGTACGGTTGTCTCTCGTAGGCCAAGCTGGCTTCGTAATCCTCGTGCATCATATTTCCGTCCATGCCGTCCATGGGCACGTCAGCTGCATACCCTCCGTAGCTTGGGAAACCAGCGTCCAGCTCTGCAAGAGATTacaacatgttttgtttttttctttacttgttacacactggaccaaCAGATGATATGTTATTTAGCTTCCTTCGCACTTAAGAGGGTTTAGTTACTGCTGTGGTCATGAACAGCAGCACAATAAATTGTATTAGCTAGTGGAAATCATCCAACCGTTTAGGCACACAGTgatcagagagaaagagaagaagaagccgAGTCTCTCGGCTCTGAGCGGACACAGAAAATACCAAGGCCATACaaggaaaaaaattataaaggaAAGGACGGGAATTAGGAGTTAGATGCAAACACAGATAAGGAAAAGACCAGGAAGGAGACCTTTGAGACTTGGCAATGAGAAATAGGTAGTGATGTAATACAGTAAGAGAACAAAGACAAGGCAAAGTGAATGAGATAAGAATGTAACAATGTGAAACAGACACT
>TU6929
TTTTCCcttttgttttaaaaaaaaaaaaaaaaaaaaagaaaagaaagaaaaaaatttaaaagaaagGAGGAAGCTACACGATTATcatcacaaaataaaaatctctTTGGCATAGAATACCCACCCAAAAgcgtaaacacacacagacacactcacatgcgcacacacacactcttaaagAGGTTCTCTAACAGAAACCTACAAGCATCGTCATcattattatcagcaaaattATGCTATAAAACAAAGTTGAGCCCTGTTAAGATTATGAGTCCCGTACTCCGTGATAATTGCATATATTACATCAGGCTGAGAGCAGAGGGAGTAATCTCTACCGACGACTATATTCTCTTCTGCCCCATTACGTCCTATGTCAGCTCCTCCGATTCCCTTTCTCCCCCGGGTCTTTAATATTCACGGTACGGTTGTCTCTCGTAGGCCAAGCTGGCTTCGTAATCCTCGTGCATCATATTTCCGTCCATGCCGTCCATGGGCACGTCAGCTGCATACCCTCCGTAGCTTGGGAAACCAGCGTCCAGCTCATCTGTATAGGGTCCATCCATGGGGGCACTGTTGTGGGCCATCTCCCAGGAAGTGGGGTCGTGTTTGAACAGAGAGTGTGTGAGCTCCACAGACACTCGCTTCTTGTAGTCGGAGTTCTTATCCTCGGAGATACGGAAGAGCACAGCTGCAGCATAAGTCAATGCCCTCGTTGTTTGAGTGCAGCAGGTCCATCAGCGGAGCCGACGCTCCCTCGCTGTCGATGAGCTCAGCTGACTGTTTGTCCAGGGCCAGCTCACACAGGATGCCCGCTGCCACGCGCTTCACGTTGTCCACCGGAGAGTAGAGGagctggag
>TU6930
tcctttatttttattaaacaaaatttCAGTAAAAACTCTTAAGTAGAAAGACAAATTTCCCTGTCAGTAGTTTGCTCCAGCTGTAGGGCCGTCCCCAACTATATCATCACACATCTGTAAAACCACTGTACCCACGTTGTTCTGCAAATCAATCACGGTTACATACGATCTTTTCTTTAAATTCAGTTCGTAACAAAAAAGACATCTTTGTTAATATTCTGGTAATGCCGGATAATGTGTGAACCTTTCCCAGTCAATAACTTAGAAAAGATGAAAAACTATCCCTAAAAACAAACCACCATCTTGGTGGTTCCTGGCAGCCCTACACTGCTCTCTAAGAGGTCTCTCCCCATCTCTTTGTTTGTTCACTCCTACTGAATTAGCGCCGCGAGACAGAATGAGTCTGTGTTAACCGACTCATAACTGTTGGGTCACAGCGGGAGAAAGTTGACAGTATATTGTGTTAAAACTACAGCGTAGACAGCAGTGTCTGTTACAAAGGCGTTAAGTAAGAAACAGAGCGGTGAGCAGGTGCACCGTGCATGTTGAGCCAACTCTGGCAGTGTTTTCAACTAttactctttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU6927 True 1558 lncRNA 0.45 2 16790391 16792849
TU6929 False 858 lncRNA 0.37 7 16788545 16843003
TU6930 False 605 lncRNA 0.52 2 16762368 16792849

Neighbor

gene id symbol gene type direction distance location
hap1 LOC100707478,LOC101477593,LOC102309093,LOC102207703 coding downstream 10965 16726000 ~ 16751403 (-)
LOC120569500 NA coding downstream 45259 16710764 ~ 16717109 (-)
LOC120561596 LOC103384341,LOC104922281 coding downstream 56983 16702962 ~ 16705385 (-)
LOC120561619 LOC104921626 coding downstream 66991 16691687 ~ 16695377 (-)
krt94 LOC104921625,LOC107090776,LOC103384339 coding downstream 95062 16663839 ~ 16667306 (-)
ldb1b ldb1,LOC104963201,LOC108444470,LOC104922276,LOC103353370,LOC103150493,LOC100706951,LOC108270891,LOC101479469,LOC107090769,LOC106518772 coding upstream 784 16843787 ~ 16873490 (-)
cant1b LOC104922273,LOC104950180 coding upstream 52702 16895705 ~ 16904668 (-)
afmid afmid,LOC102792082 coding upstream 64093 16907096 ~ 16924598 (-)
syngr2b syngr2,LOC107090770 coding upstream 93798 16936801 ~ 16945862 (-)
LOC120556225 NA coding upstream 103863 16946866 ~ 16957332 (-)
G5125 LOC103362543,LOC101066958,LOC101475774,LOC104921624,LOC102209940,LOC103384338 non-coding downstream 110842 16649045 ~ 16651526 (-)
G5079 mettl26 non-coding downstream 409900 16350067 ~ 16352468 (-)
G5081 NA non-coding downstream 412385 16348266 ~ 16349983 (-)
G5069 NA non-coding downstream 436522 16325521 ~ 16325846 (-)
G5068 NA non-coding downstream 437045 16325015 ~ 16325323 (-)
LOC120568012 NA non-coding upstream 74071 16917074 ~ 16920726 (-)
G5202 NA non-coding upstream 124906 16967909 ~ 16972243 (-)
G5242 NA non-coding upstream 208625 17051628 ~ 17051857 (-)
G5261 NA non-coding upstream 217158 17060161 ~ 17060543 (-)
G5264 NA non-coding upstream 218907 17061910 ~ 17062119 (-)
LOC120558720 NA other downstream 414446 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1076729 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 1858139 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2043266 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 2719858 14018902 ~ 14042510 (-)
LOC120569099 NA other upstream 569050 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 867636 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 974504 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 992901 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 1036865 17879868 ~ 17881759 (-)

Expression


Co-expression Network