G5268


Basic Information

Item Value
gene id G5268
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17076316 ~ 17079018 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU7108
ACAGCAAAAAACAAATAGTTTTTATCACACACTACAAAAATAACTTATTGAAGGAGTAGGGGTGTTGCAGCTATACAGGCCCATTGTTAACTTCTACATCTCGGTTACCTTGTCAGATGACCTGAATACACAGTATCAAGCTTGAGAGGTTCACCATAACACCTCCTCACCTCGTCGGTCATTCTATCTGCAATAACAAGTTTTCAACACTGCAAGGACCAAAATAAAGCCACAGAGACACTGAAATACGGAAAACGGGTCTGCCAGAgtgaactaaaaaaaaatcatgagtGCAGATTACAAGCAGATAAATACACGATCTAACACGTCCATTAGTGCTGGAGCTGAATGACAGGGCCGGGAGGACAAAGATCTTACGATTAGAGAAAAGAGTGCAGTTACCCACAGTGTCATCACCCGCTTCGGCTTGAAATCAAACAAGGATCAAAGTCATATCCATGAAATAGTGAACGTTAATAGTTACCTCGTCACATACGTACACAGCACACCACACGCTAGTTCACGGTTACACACACGTGCCTAGTCACTAGAGAAAAAACAAAGCTATTCAGTAGTTAAGCCACTTTTGGTACAATTGCAAAATAGagagatactgtatatcaaaCAGATTTtgttataccttttttttttttttttttttttttaacaggttgTTACAAACAATGCAAAGATAATTGTCTTTATAAAATTCCAGACTCTACCATACAGATACAGATTCTTGGAGTATAGAACACCACGTAagactacttttttttattttttttttaaatgataaaacTTTGTGAAATGACATCCCATTTGTGTGACTGGAAATTTGGAGAGATATCTTTGCTGTCCTTGCTGGCTGACTGCATTGTCAGTAATCACCCTTGCACTTGCAAAGTGAGCTTTGTGGTTAAAAGCAAGATGAATGCAACATAAACCACTTTGATTTGAGGCAAGAATGTTGCTGTAGGTGTAATTACCTAGATTTATGAGTCAGTAGCCAATCATAAACATGCAAACCAAGTCATTTacagaaaacagaaatatgGACTTTCACTCAACAGAACattaactttcaaaaaaaaaaaaaaagcatgttctGTGCAAGGAAATGAAGATGTATTGCAaaccctttttgtttttttctttaagtaAATGAACTGCCAAGTCACATAAATGGgtgttattaatattattaatccTGCTACTACACAGCtcatacaacaacacacagccAGAGTTAAATGCTGTCACAACCTgattcctgattggtcagggTTTCACATTTAGCACAGGCATAAGCAAACACCTGCAATGAATCTTCACCGTCCTTTCACAATTCCCAACGTCCTCTCTACTTCTTCTTGATGCATATCATTAGGAGACCAAGGCACTTGCCCTTCCGATTTTCTTGAATATACTTAGAGGACCTCAAACAGACAGAAGACAACTTTATCTTAATTTAGCTCTGGTGTTCAAAAGACCATTTCCCTGAAAATTCCTACAAATATACTGACTTCCACTAACTGtatctcctttttctctctatagtatgttgtgtttaattttTGGTAAATATCAATTGCTTTatcccctctctttctgttAGATCCAGAAAGTGCTGTGTGTAATGATGGCAACCAGTCGGAATTGAAAAATGGAAGGACAGAGAAAGAATAGGTAGGAGAAAGAGAGCTGGACAGAGAAAGTGAAGAGACCATATAGTAAAAATACAGCTAACTAAATATAGTAATACCAAAACGAACACGCGCCACAGAATTTCACAGAATTCCTGATATATAACAATTGACACACGGATAATACACTTTGGACCTCATGTGAATGACAACACAGTACAAAACAGTAGAAATACAGTTACCACCATTGTGTAATATATGTTTTTCTATAGTACTTTTCTGAAAAGGTTCTTGGCTATGGTGGAGCATGACGGGACTTCTCTTCAGCCACTGAAATCAGCAGGGCACATCAAATCTTGTGGATTGTTTTGGAACTCAGGGACCCAACACTCTTTGTGTCCATCTGATTAGATGACTTCTATAACTAAACACACTAATAGCGTCTTTCTGATTCTAATACATATGTAATGCATGTGTTAGAATATATTTTGTTGGCGTAGcgaatttaaatgttttacgTCTTAGTTCGGGCAATCGACCACTTTAAATTCTTACACACTTACAGATTTCTCGATCTACCAGCGGTGAAACTTGACATTGAACGCTTGACTGATTTTTCCAAAGTgattgccttttttttaattttcctgcTGGCCTGGAATAAAATTAATCTCAAATAACTCTTTGACTTTTCCAGGCTTTCAGTGACCGCAGGAACCCTGTGCATCTGTCCTGTGCTAAATGATCATGCGCTGACCGAGGACTTGCATCTTTATAGTCTCAGTAATCTTCCTCTGCTTCCATCCTTTCCTTCGCCTGCACTGAACTGAGAGGTGACGGGCACATGCCGAGGCGATGTGACCAAGACTGCCCAGCTGTCGGTGCAGGTGGAGGAGAGGTGGCCGGCAGAGAAGAAGAATTACTCCGTTGCAGCTGAACTCCATCCCGACACACCCTCATCTATCTTCCCCTCCCTCAAGACCGTGCATCCGTTTTTGACTTCACTATTGTAATCACGCTCGTCGCTGTTGCCATCTTACCCGGTATGAGTGGGCCGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7108 True 2703 lncRNA 0.48 1 17076316 17079018

Neighbor

gene id symbol gene type direction distance location
notum1b notum,LOC103356199,LOC102201337,LOC102290801,LOC107090768 coding downstream 80675 16985394 ~ 16995641 (-)
tmc8 LOC103356194 coding downstream 110091 16957612 ~ 16966225 (-)
LOC120556225 NA coding downstream 118984 16946866 ~ 16957332 (-)
syngr2b syngr2,LOC107090770 coding downstream 130454 16936801 ~ 16945862 (-)
afmid afmid,LOC102792082 coding downstream 151718 16907096 ~ 16924598 (-)
npb npb coding upstream 73904 17152922 ~ 17154504 (-)
sgsh sgsh coding upstream 76713 17155731 ~ 17161156 (-)
LOC120559819 NA coding upstream 167531 17246549 ~ 17256447 (-)
LOC120569451 NA coding upstream 207948 17286966 ~ 17291473 (-)
si:ch211-196h16.12 LOC101466180,LOC100708390,LOC102193965,LOC103356221,LOC103465598 coding upstream 255919 17334937 ~ 17338618 (-)
G5269 NA non-coding downstream 2296 17071797 ~ 17074020 (-)
G5267 NA non-coding downstream 4588 17070177 ~ 17071728 (-)
G5265 NA non-coding downstream 10790 17063068 ~ 17065526 (-)
G5264 NA non-coding downstream 14197 17061910 ~ 17062119 (-)
G5261 NA non-coding downstream 15773 17060161 ~ 17060543 (-)
G5270 NA non-coding upstream 143 17079161 ~ 17081397 (-)
G5361 pcyt2,LOC103356210 non-coding upstream 35957 17114975 ~ 17122218 (-)
G5375 LOC102309293 non-coding upstream 99381 17178399 ~ 17185803 (-)
G5376 NA non-coding upstream 103629 17182647 ~ 17186382 (-)
G5393 NA non-coding upstream 169967 17248985 ~ 17251464 (-)
LOC120558720 NA other downstream 728394 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1390677 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2172087 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2357214 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 3033806 14018902 ~ 14042510 (-)
LOC120569099 NA other upstream 333035 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 631621 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 738489 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 756886 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 800850 17879868 ~ 17881759 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G431728 NA unknown CI01000306 null 1747526 ~ 1748950 (-)
striped catfish (Pangasianodon hypophthalmus) G177166 NA non-coding NC_047605.1 CM018551.1 6960487 ~ 6961539 (+)