G5375 (LOC102309293)


Basic Information

Item Value
gene id G5375
gene name LOC102309293
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053112.1
NCBI id CM020909.1
chromosome length 48724115
location 17178399 ~ 17185803 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU7261
CCGCACACCACACCAGCATCCTCATTGTGATTACAGTTGTGAGACCCAAACCCTCTGTGGCTGCACTCGCTGAGCTTTGATTCGCTGCCTCTGCATGTGACATCATCCAACCAGATGGGCCCGCTGCCCGGTCCAAAGCGTGCACCTTGTGGTGCTGACAGGGCCCTGCCACAGCCCAGCTGTCTACACACCACCTGAGCATCAACCAGCTCCCAGGCATCGTCACAAACCGTCCCCCACTCTCCACGGTGGAAGATCTCTACTCTGCCAGAGCAGGAGTTGTTTCCTCCATTGGCCAGACGGACCTGCCCCTCAACTGCTGTGCTgttacttgttgttgttgtggtagttTCCACCTGATCGCTGGTGAAGTTCTGAGGTGGTGGATGAGGTGTGGTTGGTAAAACTGTGCTGTTGAGTTCTGGTTGAACGCTGAAAAGTCACTGTGAACTCACATGACAACTACAGCCTTTACTGCCATCAGCATTACATTAATTAGGGAAAGCCTAATTTTCTTTATAACCAGTAGGCGATTAG

Function

NR:

description
PREDICTED: deleted in malignant brain tumors 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU7261 True 537 lncRNA 0.52 2 17178399 17185803

Neighbor

gene id symbol gene type direction distance location
sgsh sgsh coding downstream 17243 17155731 ~ 17161156 (-)
npb npb coding downstream 23895 17152922 ~ 17154504 (-)
notum1b notum,LOC103356199,LOC102201337,LOC102290801,LOC107090768 coding downstream 182758 16985394 ~ 16995641 (-)
tmc8 LOC103356194 coding downstream 212174 16957612 ~ 16966225 (-)
LOC120556225 NA coding downstream 221067 16946866 ~ 16957332 (-)
LOC120559819 NA coding upstream 60746 17246549 ~ 17256447 (-)
LOC120569451 NA coding upstream 101163 17286966 ~ 17291473 (-)
si:ch211-196h16.12 LOC101466180,LOC100708390,LOC102193965,LOC103356221,LOC103465598 coding upstream 149134 17334937 ~ 17338618 (-)
rfx1b NA coding upstream 183701 17369504 ~ 17385031 (-)
nthl1 nthl1,LOC102778712 coding upstream 237790 17423593 ~ 17428615 (-)
G5361 pcyt2,LOC103356210 non-coding downstream 56181 17114975 ~ 17122218 (-)
G5270 NA non-coding downstream 97002 17079161 ~ 17081397 (-)
G5268 NA non-coding downstream 99381 17076316 ~ 17079018 (-)
G5269 NA non-coding downstream 104379 17071797 ~ 17074020 (-)
G5267 NA non-coding downstream 106671 17070177 ~ 17071728 (-)
G5393 NA non-coding upstream 63182 17248985 ~ 17251464 (-)
G5418 NA non-coding upstream 125767 17311570 ~ 17311817 (-)
G5402 NA non-coding upstream 131473 17317276 ~ 17317820 (-)
G5430 clg1h19orf53,LOC108236319,LOC103356219,LOC105917105,LOC106917567,LOC102229420,LOC106531096 non-coding upstream 145954 17331757 ~ 17333610 (-)
G5435 LOC104952676 non-coding upstream 163072 17348875 ~ 17350975 (-)
LOC120558720 NA other downstream 830477 16345718 ~ 16347922 (-)
sdk1a sdk1,LOC104962449,LOC103362694 other downstream 1492760 15426544 ~ 15685639 (-)
ubl5 ubl5 other downstream 2274170 14901146 ~ 14904229 (-)
LOC120555938 LOC103372451,LOC105939179,LOC103462061,LOC108245380 other downstream 2459297 14712144 ~ 14719102 (-)
LOC120558548 pde4a,LOC102299733,LOC102791271 other downstream 3135889 14018902 ~ 14042510 (-)
LOC120569099 NA other upstream 226250 17412053 ~ 17421098 (-)
LOC120560175 NA other upstream 524836 17710639 ~ 17713898 (-)
epn3b LOC102786458,LOC100695148,LOC103373411,LOC101478063,LOC105919984,LOC107373120,LOC108247943,LOC102303243 other upstream 631704 17817507 ~ 17835761 (-)
LOC120556682 NA other upstream 650101 17835904 ~ 17848037 (-)
LOC120556582 NA other upstream 694065 17879868 ~ 17881759 (-)

Expression


Co-expression Network